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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042933 ID=TCONS_00042933|Name=TCONS_00042933|organism=Clytia hemisphaerica|type=transcript|length=2164bpRun BLAST on NCBI protein sequence of TCONS_00042933-protein >TCONS_00042933-protein ID=TCONS_00042933-protein|Name=TCONS_00042933-protein|organism=Clytia hemisphaerica|type=polypeptide|length=444bp MMAGNNEGCQIMVFTPSYEEFKDFSGYIRYMESKGAHKAGIAKVIPPKEWRun BLAST on NCBI transcript from alignment at sc0003792:412..8245- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00042933 ID=TCONS_00042933|Name=TCONS_00042933|organism=Clytia hemisphaerica|type=transcript|length=7834bp|location=Sequence derived from alignment at sc0003792:412..8245- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0003792:412..8245- >TCONS_00042933 ID=TCONS_00042933|Name=TCONS_00042933|organism=Clytia hemisphaerica|type=CDS|length=14685bp|location=Sequence derived from alignment at sc0003792:412..8245- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00042933 vs. Swiss-Prot (Human)
Match: KDM4A (Lysine-specific demethylase 4A OS=Homo sapiens GN=KDM4A PE=1 SV=2) HSP 1 Score: 437.958 bits (1125), Expect = 1.195e-138 Identity = 201/324 (62.04%), Postives = 245/324 (75.62%), Query Frame = 2
Query: 455 NEGCQIMVFTPSYEEFKDFSGYIRYMESKGAHKAGIAKVIPPKEWQAVRRYNMKRIGEMEIKTPIQQTVSGQQGLFQLINIQKKTMQVKNLKELAETPKHKPPEGS-IDELERKFWKNITFNPSIYGADVPGTIYDKDVKHWNINSLNTILDTLNSDCSVKILGVNTAYLYFGMWKACFPWHTEDMDLYSINYLHHGAPKFWYSIPPEHGKRLETLAKGFFSGSAQDCSEFMRHKMTLISPQILRKFSIPVNKIVHNEGEFMVTFPYGYHAGFNLGFNIAESTNFASERWIEFGKKAKHCQCNRDSVKINMDVFIKKFQPEEWK 1423
N +IM F P+ EEF++FS YI Y+ES+GAH+AG+AKV+PPKEW+ Y+ I ++ I PIQQ V+GQ GLF NIQKK M V+ +++A + K+ P S +ELERK+WKN+TFNP IYGADV GT+Y+K V WNI L TILD + + + I GVNT YLYFGMWK F WHTEDMDLYSINYLH G PK WYS+PPEHGKRLE LAKGFF GSAQ C F+RHKMTLISP +L+K+ IP +K+ GEFM+TFPYGYHAGFN GFN AESTNFA+ RWIE+GK+A C C +D VKI+MDVF++KFQPE +K
Sbjct: 9 NPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYD--DIDDLVIPAPIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFNPPIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAVLCSCRKDMVKISMDVFVRKFQPERYK 330 The following BLAST results are available for this feature:
BLAST of TCONS_00042933 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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