TCONS_00042919 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042919
Unique NameTCONS_00042919
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length924

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042919 ID=TCONS_00042919|Name=TCONS_00042919|organism=Clytia hemisphaerica|type=transcript|length=924bp
GTCGGGGACTGCAGCTTCTGCATCGAAAACCCAAATGAGATTCAGCGCCT
CTCCAAATGGGTCGATTCTATCGCCAGTATAtggtgACTTTCTAAATAGC
CTCCTTGGCACTGATCAACGAAATGATTCAAGCATAATCGAAAACAATAG
TCAATCATCTAGTCAAGAGCATCTTGTTGGACAGCAATTTGACCCACAAG
CTCAACTTTACCAACAAAATAAGCGattgGTTGAAAGAGTCACAGACTTG
GAAGGGAAAGTGGCCACAAAATGTCCAAAATGATGACACATCGAGAATCC
GCCGCAACCAACCGGAACGATCACATTGAAAGCTACATTGCTGAAAACCA
CTATTGTAAAgcTACTCTGGATTCTATATCCAAATCAGCAACCAGCATGG
GAAGCCTCACCAGGGAGCTGATGGACGAAATTCTAACGGAGGACGAGTTT
GCCACCTGCACGGTCAAAGGACAAGGCCAGACAGATCGGGGAGGAATCTC
TGAGGAAAAGAGAGAAATTATTGAAAAGTACGTCAAGAAACGATACGGGG
AAAGTGCATCTGATCCTACCATCCGCACGTTCATGCGTCAGTATTTCACC
AATCGGCGACGCACAAAGCCTGAAAATCGAAAGAAGGCTAGAGGAAACGA
AGAGAGGGAGGAATAATTCGTGCTCACTATAATTCGTTGTAATTTACTTG
CAAATGTACTCTCTATTTTATTAACACGAGcctagaaaattacaaaaatt
aagaacaattcaagggcGTCTCGCAACTAACAGCAGCCTTCCATAAGGGA
ACTAATTTACAGTAATTTTCGCGTTGTAGGGTGTCTACaaactactttaa
tcgtagaaattttagcgagactaattttagcgttttagcgagttttccct
gtTTCCGCTAAAAtgaatctcgct
Run BLAST on NCBI

protein sequence of TCONS_00042919-protein

>TCONS_00042919-protein ID=TCONS_00042919-protein|Name=TCONS_00042919-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MSKMMTHRESAATNRNDHIESYIAENHYCKATLDSISKSATSMGSLTREL
MDEILTEDEFATCTVKGQGQTDRGGISEEKREIIEKYVKKRYGESASDPT
IRTFMRQYFTNRRRTKPENRKKARGNEEREE
Run BLAST on NCBI

transcript from alignment at sc0003778:111..5488+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042919 ID=TCONS_00042919|Name=TCONS_00042919|organism=Clytia hemisphaerica|type=transcript|length=5378bp|location=Sequence derived from alignment at sc0003778:111..5488+ (Clytia hemisphaerica)
GTCGGGGACTGCAGCTTCTGCATCGAAAACCCAAATGAGGTATGATAGCT
GTATAATTAAGAATCGATTTGTCGACCACTAATTGTTTTAGATAAGTTCT
AGATAAGGCCTCAATATGTGGTGTGTGAAAGACCATGAATATTGCCATGA
GGAGAGCCATTCCCGGGAGTCAgctgtatatatttttaacacTAAATACA
TTTTGTTTAAATGTCCTCTCTTTCAGATTCAGCGCCTCTCCAAATGGGTC
GATTCTATCGCCAGTATAGTAAGTTCtaatcttagattcaaaacttactt
ttgatcgccatctagacgagaagataaaaaaggccaataaaggaaTTGGT
CTTATTAATCGACTTCGCAAGCATGTGCCTAGGAGATCTCTACTAACNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNTGAGAATGGGTCACAATGGAACCGAAATAGACTTTGCTTC
CTAACTTCCAATCTTGATCTTTTCCAACCTTGCAAGAAACATCATTTTGC
AGACTGGCCTTAATCTAACTATATATCACTAAAACATGGTTAGAAATCAT
TTAACTTTGGTATAATTGTAAACCTtgtatatttggaaaatttcttgTTA
AAAAGAATTTAGATCCCTTCATATTGTAACATAACGAtgattgtaaattt
ttttttcagtggtgACTTTCTAAATAGCCTCCTTGGCACTGATCAACGAA
ATGATTCAAGCATAATCGAAAACAATAGGTAAGAGCAAGCCCTGTTTTTC
TACTAACTTGATTTTATTTGTAGTATACAGTCTTGAGGCGAAATATAAGG
GCCGTATTGGGTCAATAAAATCTGTATTTGGCGAGGTTTTGCCGAGAATT
TGCAGGCACGACACTAATTATTAccattttctttcaattcagTCAATCAT
CTAGTCAAGAGCATCTTGTTGGACAGCAATTTGACCCACAAGCTCAACTT
TACCAACAAAATAAGCGGTAAGACATTTGGGAAGTCTGTgttcaaaatca
aatgaaagagCTCCAGCTCCAGCTCATGCCTTATTGAGCTAAAAAAAGTC
ATAATCAACAATTTTATTTACGTTCCGATTGATACAGGTTTGGGAAAATG
GCTTGAAAGTAATATTgctttttaataataatttcaGGATTGCATTGAAT
ATTTCGTAATTATTTGGAATTTCTTTTCCTCTTCAATTTGGCcttcaaaa
taattaaaatgaatgacttttttaaaattttagattgGTTGAAAGAGTCA
CAGACTTGGAAGGGAAAGTGGCCACAAAATGTCCAAAATGATGACACATC
GAGAATCCGCCGCAACCAACCGGGTAATTTAGTTATAAGCTCCTAAATGA
CTTTCTCGAGAATAAAGCAAATCATTTTAGTTCTGTAGTTTTTTTTGTTA
ACCAAATataaaatgactgtattctttcaaattctgtgaaactcacccgg
agggtattcttagggtattcttacgatttcgCCAATCTTAAcactgatat
tcttataaaagatattcttattaaaacaaaaagcgtgtaataggtcaata
atttccgaaaataGGAGGGGTTGATTAAAGTTTGGAGTTTCCCTTTTCAA
GAATGGGGATAGATAAAAATAGGGACACTTTTGGAACCGTTGCACCCACT
ACGTCAGTATATTAATTTACTTATATTCCATCTTTTTAGAACGATCACAT
TGAAAGCTACATTGCTGAAAACCACTATTGTAAAGTAAGCTCACTCTAAA
TGATTTCTATAATGATTTTCCTCCagctcccactggaaaaattgtcaaaa
ttggtTGGAAAGATACCCTTAATGTTTACCCCATTCTAAAATTACCTTAT
TATGATTTATCACCATGGGCGATTAGTATTTGTTGAAAGGACCAgggaaa
ttcgaaacaaaaatatGATATCAAAAGTTTTGCCTCACACTTTTTTTCCT
CACACGTTTTGCTTACACTATGTTTTaggaaaataaatgaataagtaatt
tatcttttttttatttccaggcTACTCTGGATTCTATATCCAAATCAGCA
ACCAGCATGGGAAGCCTCACCAGGGAGCTGATGGACGAAATTCTAACGGA
GGACGAGTTTGCCACCTGCACGGTCAAAGGACAAGGCCAGACAGATCGGG
GAGGAATCTCTGAGGAAAAGAGAGAAATTATTGAAAGTAAGTGTATTTAC
CACAAATACGATTTTgatcttaaaattttatgtctttttttatataaaaa
tatgtaCTAGAGGTATAATATGTAGTTCAGAAGAGGGTTGCTATTTCAAA
ACTCTATGTAATGTTAAATTAGGGATTCCCTACCGAgtgttttaaaaaaa
gttaacaaGTTTGagtttagattttgagaaagcCAAAACTGATATTAGAT
ATAAACTTTTGTTGATTCATTTTATGGGGGTACATactgttctcaacttc
agttgagctataattctcaacttcagttgagctataatctgagaatgtct
gtatgtctgtatgtatgtccgtccgaaaactttttagggcaggctggaca
cttcaaaaaaggtcggatttggctgaaatttggcacacttgctccttggg
tgaatatctgggggtgtttttttcattttttgaaNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggt
gaatatctgggggagtttttttcaatttttggaaattttgattcttgggg
cctggggacgagtttttcgccaaaacgaggctaaaaccttagggcagcct
ggagatttcaaaaattgttcgatttggctgaaattttgcacacttgttcc
ttgggtgaatatctgggggtctacaatcgggcctatgaataatttgaagc
cactgaagttgagcccagtgcgttgcgcacctTCGACTATACATGTATGT
ATTGCATATTACCCAAATTATTATCAATGCTACCATACTCATTTAATGGG
GATTTTCCCGTAGAAAAAGGTTGAAAGGCTGTAATTTCGGTCTCTTACGA
GTCCTAGAATCTCCTAGAAAAGTGCAGTCGATTGGAAATCTTCTGGTTTA
AAATACTCTTTCCTTGTGTATTTTGTTTAGAGTACGTCAAGAAACGATAC
GGGGAAAGTGCATCTGATCCTACCATCCGCACGTTCATGCGTCAGTATTT
CACCAATCGGCGACGCACAAAGCCTGAAAATCGAAAGAAGGCTAGAGGAA
ACGAAGAGAGGGAGGAATAATTCGTGCTCACTATAATTCGTTGTAATTTA
CTTGCAAATGTACTCTCTATTTTATTAACACGAGcctagaaaattacaaa
aattaagaacaattcaagggcGTCTCGCAACTAACAGCAGCCTTCCATAA
GGGAACTAATTTACAGTAATTTTCGCGTTGTAGGGTGTCTACaaactact
ttaatcgtagaaattttagcgagactaattttagcgttttagcgagtttt
ccctgtTTCCGCTAAAAtgaatctcgct

Coding sequence (CDS) from alignment at sc0003778:111..5488+

>TCONS_00042919 ID=TCONS_00042919|Name=TCONS_00042919|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0003778:111..5488+ (Clytia hemisphaerica)
ATGTCCAAAATGATGACACATCGAGAATCCGCCGCAACCAACCGGAACGA
TCACATTGAAAGCTACATTGCTGAAAACCACTATTGTAAAgcTACTCTGG
ATTCTATATCCAAATCAGCAACCAGCATGGGAAGCCTCACCAGGGAGCTG
ATGGACGAAATTCTAACGGAGGACGAGTTTGCCACCTGCACGGTCAAAGG
ACAAGGCCAGACAGATCGGGGAGGAATCTCTGAGGAAAAGAGAGAAATTA
TTGAAAAGTACGTCAAGAAACGATACGGGGAAAGTGCATCTGATCCTACC
ATCCGCACGTTCATGCGTCAGTATTTCACCAATCGGCGACGCACAAAGCC
TGAAAATCGAAAGAAGGCTAGAGGAAACGAAGAGAGGGAGGAATAAATGT
CCAAAATGATGACACATCGAGAATCCGCCGCAACCAACCGGAACGATCAC
ATTGAAAGCTACATTGCTGAAAACCACTATTGTAAAgcTACTCTGGATTC
TATATCCAAATCAGCAACCAGCATGGGAAGCCTCACCAGGGAGCTGATGG
ACGAAATTCTAACGGAGGACGAGTTTGCCACCTGCACGGTCAAAGGACAA
GGCCAGACAGATCGGGGAGGAATCTCTGAGGAAAAGAGAGAAATTATTGA
AAAGTACGTCAAGAAACGATACGGGGAAAGTGCATCTGATCCTACCATCC
GCACGTTCATGCGTCAGTATTTCACCAATCGGCGACGCACAAAGCCTGAA
AATCGAAAGAAGGCTAGAGGAAACGAAGAGAGGGAGGAATAAATGTCCAA
AATGATGACACATCGAGAATCCGCCGCAACCAACCGGAACGATCACATTG
AAAGCTACATTGCTGAAAACCACTATTGTAAAgcTACTCTGGATTCTATA
TCCAAATCAGCAACCAGCATGGGAAGCCTCACCAGGGAGCTGATGGACGA
AATTCTAACGGAGGACGAGTTTGCCACCTGCACGGTCAAAGGACAAGGCC
AGACAGATCGGGGAGGAATCTCTGAGGAAAAGAGAGAAATTATTGAAAAG
TACGTCAAGAAACGATACGGGGAAAGTGCATCTGATCCTACCATCCGCAC
GTTCATGCGTCAGTATTTCACCAATCGGCGACGCACAAAGCCTGAAAATC
GAAAGAAGGCTAGAGGAAACGAAGAGAGGGAGGAATAAATGTCCAAAATG
ATGACACATCGAGAATCCGCCGCAACCAACCGGAACGATCACATTGAAAG
CTACATTGCTGAAAACCACTATTGTAAAgcTACTCTGGATTCTATATCCA
AATCAGCAACCAGCATGGGAAGCCTCACCAGGGAGCTGATGGACGAAATT
CTAACGGAGGACGAGTTTGCCACCTGCACGGTCAAAGGACAAGGCCAGAC
AGATCGGGGAGGAATCTCTGAGGAAAAGAGAGAAATTATTGAAAAGTACG
TCAAGAAACGATACGGGGAAAGTGCATCTGATCCTACCATCCGCACGTTC
ATGCGTCAGTATTTCACCAATCGGCGACGCACAAAGCCTGAAAATCGAAA
GAAGGCTAGAGGAAACGAAGAGAGGGAGGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026686XLOC_026686Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042919-exon-sc0003778-1491911889:111..149TCONS_00042919-exon-sc0003778-1491911889:111..149Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1510915933:111..149TCONS_00042919-exon-sc0003778-1510915933:111..149Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1575043694:111..149TCONS_00042919-exon-sc0003778-1575043694:111..149Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1491911889:337..378TCONS_00042919-exon-sc0003778-1491911889:337..378Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1510915933:337..378TCONS_00042919-exon-sc0003778-1510915933:337..378Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1575043694:337..378TCONS_00042919-exon-sc0003778-1575043694:337..378Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1491911889:2320..2388TCONS_00042919-exon-sc0003778-1491911889:2320..2388Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1510915933:2320..2388TCONS_00042919-exon-sc0003778-1510915933:2320..2388Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1575043694:2320..2388TCONS_00042919-exon-sc0003778-1575043694:2320..2388Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1491911889:2553..2627TCONS_00042919-exon-sc0003778-1491911889:2553..2627Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1510915933:2553..2627TCONS_00042919-exon-sc0003778-1510915933:2553..2627Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1575043694:2553..2627TCONS_00042919-exon-sc0003778-1575043694:2553..2627Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1491911889:2894..2983TCONS_00042919-exon-sc0003778-1491911889:2894..2983Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1510915933:2894..2983TCONS_00042919-exon-sc0003778-1510915933:2894..2983Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1575043694:2894..2983TCONS_00042919-exon-sc0003778-1575043694:2894..2983Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1491911889:3350..3394TCONS_00042919-exon-sc0003778-1491911889:3350..3394Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1510915933:3350..3394TCONS_00042919-exon-sc0003778-1510915933:3350..3394Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1575043694:3350..3394TCONS_00042919-exon-sc0003778-1575043694:3350..3394Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1491911889:3681..3846TCONS_00042919-exon-sc0003778-1491911889:3681..3846Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1510915933:3681..3846TCONS_00042919-exon-sc0003778-1510915933:3681..3846Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1575043694:3681..3846TCONS_00042919-exon-sc0003778-1575043694:3681..3846Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1491911889:5091..5488TCONS_00042919-exon-sc0003778-1491911889:5091..5488Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1510915933:5091..5488TCONS_00042919-exon-sc0003778-1510915933:5091..5488Clytia hemisphaericaexon
TCONS_00042919-exon-sc0003778-1575043694:5091..5488TCONS_00042919-exon-sc0003778-1575043694:5091..5488Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042919-proteinTCONS_00042919-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003778supercontigsc0003778:111..5488 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.329036	0.540651	0.224345	0	2.51415	2.67232	4.52945	5.02534	3.41003	2.77831	4.7887	4.27914	3.06809	4.48952	0.911657	1.06605	1.59867	1.12941	2.1494	0.602555	1.23933	1.24735	0.419288	1.09005	1.83885	3.71205	0.152417	0.214816	0.745849	0.145253
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018379BEN_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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