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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042915 ID=TCONS_00042915|Name=TCONS_00042915|organism=Clytia hemisphaerica|type=transcript|length=1623bp
GGTTTGGGTCCTTTGAAGCCATAATTCTTGCTTGTAGCCACTGCTCCAAA
TGGATCAGGTTTGGTTCTGCCTTTCGCCTGAGGATCAAGGAGTACTCAGA
CCATTTTCTCAGGAGGTGGTTGGGAAGTCTCTTTAGTATTTGTCTCAGAA
CATCAGTGCTGTGGATGTCAGCCGTATACTTCATTTTCACTAATGTATTA
ATGCAAGTAGACAGGGCGTAGTAGAATTGGGTTAGAGACCTTGAATCATG
TTCGGGTATTTGGTTACCAGTGACAACCTTTCGTATTGTTGCTTGGGCAA
CCAGTGAAGGATTACCAAACATGTATTTAAGTCGTTTGAGTGAAGCGATG
TAGCCATCGGTGTCACTTGCGAAGCCTTCTATTGCCTTCTTTGGTTCACC
CACGAGGTGTTGGTTTAGGTAGgttcttttttgaaagatgTCCAAGTATG
GTTGAATGCATTTGCATTTGCATTTGAACGTCATGGATCCTACCATCTGG
GATGATGTTAATAGTGGATCGATTGAGGTCGTCTATCCAAGCATCTACAG
CTTGTGTGGAGGAAGATTCATCTTTGTCTTCCGGCGATACCCTTTCGGTT
TCTTTATCTCTCTCCCTTGTGGACTTTATTTTGACACTTGGCTGACGTTT
GTCTTGAATGATGTAGGTACTGTGGAGAGGATCACCTTCAATGATTGGAC
TATTCAGTGGTGCATCGGTTCGCAGATTTTCTTGGAACGTAACTTGCCTT
TGTGTTCGACTGTTTCCGTAACTTTGGTACAAGTCCTGGTTGGTAAACTC
ACCACTTGATAATCGAGATTTGAGTTGATCTCTTGTTGTTTGGATTGGTT
CTTGAAGGTAGAGTCTTGATTCTGAAGTTGGGTCTAGTCCGTCTTCGTAA
ACATTTGGTCTTCGGAGAGGACTGGGTAAACTTGAGCTTGGTTTATTTCC
CCTTTGCAGTTTAGGATAGTTGTCGAGAAAGGGGGCTGTTTCTTGTGAAT
TTGCAAGATGTGGTAAGTCTGAAAGGCTGCTGCTTTTCCTTCCTATGTGC
TTTACATCAGATGATTTCTTTACATCAGCATTGTGTCGTCTGTTTGTAGT
TTCAGTAAGGTTCTCAGTGACATGAAGCTGTGAGAAGGCTGCGGTAATAT
CGTCAGGCAGTGATTGAGGTCTGTCATCTGTCAGGGATTTCTCCTCTTCT
TGGATTTGGGTTGCGGTTTCTTCTCTCCACATTTGGActctttctttaac
tttttccgATGAAGACGAGGATAACGTGTCGTTCTCACGTTCCTTCAGGT
ATGTTGTAACGTCACCACAACAAGAGTTGATTCTCAAGGAGAGATCATCG
ATCCAGATGTCATTGTAATCAGGGTTATCGTTTTCCAGGAGTAGCATCAG
GTCTTCGTGTAGTATAACAGCTTGATGATGCATGTCATCGAGAGCAGTTC
GAAGGTATTTTACCTTAGTTCGACTACCTCTGGTTAAGATTAGTGAACTG
ATCTCCTCTATGGTTTTAGTGATCATGTACTTCTTGCTGTTCCTTTTTCT
CTTTGCTTGAGAAATCTCTCTTGACTCAGGCATTTTACTCGAGACAGATG
GGTGGAGAATAAAAGAAGTTGAG Run BLAST on NCBI protein sequence of TCONS_00042915-protein >TCONS_00042915-protein ID=TCONS_00042915-protein|Name=TCONS_00042915-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp
STSFILHPSVSSKMPESREISQAKRKRNSKKYMITKTIEEISSLILTRGS
RTKVKYLRTALDDMHHQAVILHEDLMLLLENDNPDYNDIWIDDLSLRINS
CCGDVTTYLKERENDTLSSSSSEKVKERVQMWREETATQIQEEEKSLTDD
RPQSLPDDITAAFSQLHVTENLTETTNRRHNADVKKSSDVKHIGRKSSSL
SDLPHLANSQETAPFLDNYPKLQRGNKPSSSLPSPLRRPNVYEDGLDPTS
ESRLYLQEPIQTTRDQLKSRLSSGEFTNQDLYQSYGNSRTQRQVTFQENL
RTDAPLNSPIIEGDPLHSTYIIQDKRQPSVKIKSTRERDKETERVSPEDK
DESSSTQAVDAWIDDLNRSTINIIPDGRIHDVQMQMQMHSTILGHLSKKN
LPKPTPRG Run BLAST on NCBI transcript from alignment at sc0003771:7425..9047 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042915 ID=TCONS_00042915|Name=TCONS_00042915|organism=Clytia hemisphaerica|type=transcript|length=1623bp|location=Sequence derived from alignment at sc0003771:7425..9047 (Clytia hemisphaerica)
CTCAACTTCTTTTATTCTCCACCCATCTGTCTCGAGTAAAATGCCTGAGT
CAAGAGAGATTTCTCAAGCAAAGAGAAAAAGGAACAGCAAGAAGTACATG
ATCACTAAAACCATAGAGGAGATCAGTTCACTAATCTTAACCAGAGGTAG
TCGAACTAAGGTAAAATACCTTCGAACTGCTCTCGATGACATGCATCATC
AAGCTGTTATACTACACGAAGACCTGATGCTACTCCTGGAAAACGATAAC
CCTGATTACAATGACATCTGGATCGATGATCTCTCCTTGAGAATCAACTC
TTGTTGTGGTGACGTTACAACATACCTGAAGGAACGTGAGAACGACACGT
TATCCTCGTCTTCATcggaaaaagttaaagaaagagTCCAAATGTGGAGA
GAAGAAACCGCAACCCAAATCCAAGAAGAGGAGAAATCCCTGACAGATGA
CAGACCTCAATCACTGCCTGACGATATTACCGCAGCCTTCTCACAGCTTC
ATGTCACTGAGAACCTTACTGAAACTACAAACAGACGACACAATGCTGAT
GTAAAGAAATCATCTGATGTAAAGCACATAGGAAGGAAAAGCAGCAGCCT
TTCAGACTTACCACATCTTGCAAATTCACAAGAAACAGCCCCCTTTCTCG
ACAACTATCCTAAACTGCAAAGGGGAAATAAACCAAGCTCAAGTTTACCC
AGTCCTCTCCGAAGACCAAATGTTTACGAAGACGGACTAGACCCAACTTC
AGAATCAAGACTCTACCTTCAAGAACCAATCCAAACAACAAGAGATCAAC
TCAAATCTCGATTATCAAGTGGTGAGTTTACCAACCAGGACTTGTACCAA
AGTTACGGAAACAGTCGAACACAAAGGCAAGTTACGTTCCAAGAAAATCT
GCGAACCGATGCACCACTGAATAGTCCAATCATTGAAGGTGATCCTCTCC
ACAGTACCTACATCATTCAAGACAAACGTCAGCCAAGTGTCAAAATAAAG
TCCACAAGGGAGAGAGATAAAGAAACCGAAAGGGTATCGCCGGAAGACAA
AGATGAATCTTCCTCCACACAAGCTGTAGATGCTTGGATAGACGACCTCA
ATCGATCCACTATTAACATCATCCCAGATGGTAGGATCCATGACGTTCAA
ATGCAAATGCAAATGCATTCAACCATACTTGGAcatctttcaaaaaagaa
cCTACCTAAACCAACACCTCGTGGGTGAACCAAAGAAGGCAATAGAAGGC
TTCGCAAGTGACACCGATGGCTACATCGCTTCACTCAAACGACTTAAATA
CATGTTTGGTAATCCTTCACTGGTTGCCCAAGCAACAATACGAAAGGTTG
TCACTGGTAACCAAATACCCGAACATGATTCAAGGTCTCTAACCCAATTC
TACTACGCCCTGTCTACTTGCATTAATACATTAGTGAAAATGAAGTATAC
GGCTGACATCCACAGCACTGATGTTCTGAGACAAATACTAAAGAGACTTC
CCAACCACCTCCTGAGAAAATGGTCTGAGTACTCCTTGATCCTCAGGCGA
AAGGCAGAACCAAACCTGATCCATTTGGAGCAGTGGCTACAAGCAAGAAT
TATGGCTTCAAAGGACCCAAACC Coding sequence (CDS) from alignment at sc0003771:7425..9047 >TCONS_00042915 ID=TCONS_00042915|Name=TCONS_00042915|organism=Clytia hemisphaerica|type=CDS|length=1227bp|location=Sequence derived from alignment at sc0003771:7425..9047 (Clytia hemisphaerica)
TCAACTTCTTTTATTCTCCACCCATCTGTCTCGAGTAAAATGCCTGAGTC
AAGAGAGATTTCTCAAGCAAAGAGAAAAAGGAACAGCAAGAAGTACATGA
TCACTAAAACCATAGAGGAGATCAGTTCACTAATCTTAACCAGAGGTAGT
CGAACTAAGGTAAAATACCTTCGAACTGCTCTCGATGACATGCATCATCA
AGCTGTTATACTACACGAAGACCTGATGCTACTCCTGGAAAACGATAACC
CTGATTACAATGACATCTGGATCGATGATCTCTCCTTGAGAATCAACTCT
TGTTGTGGTGACGTTACAACATACCTGAAGGAACGTGAGAACGACACGTT
ATCCTCGTCTTCATcggaaaaagttaaagaaagagTCCAAATGTGGAGAG
AAGAAACCGCAACCCAAATCCAAGAAGAGGAGAAATCCCTGACAGATGAC
AGACCTCAATCACTGCCTGACGATATTACCGCAGCCTTCTCACAGCTTCA
TGTCACTGAGAACCTTACTGAAACTACAAACAGACGACACAATGCTGATG
TAAAGAAATCATCTGATGTAAAGCACATAGGAAGGAAAAGCAGCAGCCTT
TCAGACTTACCACATCTTGCAAATTCACAAGAAACAGCCCCCTTTCTCGA
CAACTATCCTAAACTGCAAAGGGGAAATAAACCAAGCTCAAGTTTACCCA
GTCCTCTCCGAAGACCAAATGTTTACGAAGACGGACTAGACCCAACTTCA
GAATCAAGACTCTACCTTCAAGAACCAATCCAAACAACAAGAGATCAACT
CAAATCTCGATTATCAAGTGGTGAGTTTACCAACCAGGACTTGTACCAAA
GTTACGGAAACAGTCGAACACAAAGGCAAGTTACGTTCCAAGAAAATCTG
CGAACCGATGCACCACTGAATAGTCCAATCATTGAAGGTGATCCTCTCCA
CAGTACCTACATCATTCAAGACAAACGTCAGCCAAGTGTCAAAATAAAGT
CCACAAGGGAGAGAGATAAAGAAACCGAAAGGGTATCGCCGGAAGACAAA
GATGAATCTTCCTCCACACAAGCTGTAGATGCTTGGATAGACGACCTCAA
TCGATCCACTATTAACATCATCCCAGATGGTAGGATCCATGACGTTCAAA
TGCAAATGCAAATGCATTCAACCATACTTGGAcatctttcaaaaaagaac
CTACCTAAACCAACACCTCGTGGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042915-exon-sc0003771-1491911889:7425..9047 | TCONS_00042915-exon-sc0003771-1491911889:7425..9047 | Clytia hemisphaerica | exon |
| TCONS_00042915-exon-sc0003771-1510915933:7425..9047 | TCONS_00042915-exon-sc0003771-1510915933:7425..9047 | Clytia hemisphaerica | exon |
| TCONS_00042915-exon-sc0003771-1575043694:7425..9047 | TCONS_00042915-exon-sc0003771-1575043694:7425..9047 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003771 | supercontig | sc0003771:7425..9047 . |
Blast
The following BLAST results are available for this feature:
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