TCONS_00042909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042909
Unique NameTCONS_00042909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length714

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042909 ID=TCONS_00042909|Name=TCONS_00042909|organism=Clytia hemisphaerica|type=transcript|length=714bp
GTACAATGTAGTTTAAAAGTGAAGCGTTGGGTACATTTATCTGGGTCTCA
ATGGGTAAGAAAATTTTCCAGgtaccgggtgtttcaaaaatAGTGTACAA
GCTTGAAGCAAGGTTGTGAGAAAACTAAGAATGTTATAAATCTAGACTTT
TCACcatcagaaagaggaaaggcttaaattttgagctattttttaatttt
aaaaaagcgttatattttagaaaaatgaaggGATCAAAttaaccagacgg
tgtcaattgaacgaatcgaacgccgaatcaatcgaatcgaATCGTAATCG
AATATTACTCCGGATTTGCCGTTCGTTTGCTTCGATTAAATtggattgta
ttcgattatatTCGCTCGCATAAATCGCTCTCGTCTTGTGTGGTACTGCG
CACTTGCTCTTATCTGATTTTCCAATGGCATATTGGCAGCCGCCCGCGCT
AAAGTTCTAAAGCTCTAGAGGAGTGGGCTAATTTAATTGCAATCAATCTT
ATCGAACATTATCATAATCGAACTAATTAAACTAGTTGAAcataatcgaa
tctcaatcgaacataactcgaacgcaatcgagcacaatcgaataatcgac
cgttcgattgagattcattgcattcgacaatcaaattgcaattattcgag
cgcgttcgattacattcgattggTTTAATCGCTATTTTTGTTCGAACTTG
TTccattgacaccg
Run BLAST on NCBI

transcript from alignment at sc0003769:972..1685

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042909 ID=TCONS_00042909|Name=TCONS_00042909|organism=Clytia hemisphaerica|type=transcript|length=714bp|location=Sequence derived from alignment at sc0003769:972..1685 (Clytia hemisphaerica)
cggtgtcaatggAACAAGTTCGAACAAAAATAGCGATTAAAccaatcgaa
tgtaatcgaacgcgctcgaataattgcaatttgattgtcgaatgcaatga
atctcaatcgaacggtcgattattcgattgtgctcgattgcgttcgagtt
atgttcgattgagattcgattatgTTCAACTAGTTTAATTAGTTCGATTA
TGATAATGTTCGATAAGATTGATTGCAATTAAATTAGCCCACTCCTCTAG
AGCTTTAGAACTTTAGCGCGGGCGGCTGCCAATATGCCATTGGAAAATCA
GATAAGAGCAAGTGCGCAGTACCACACAAGACGAGAGCGATTTATGCGAG
CGAatataatcgaatacaatccaATTTAATCGAAGCAAACGAACGGCAAA
TCCGGAGTAATATTCGATTACGATtcgattcgattgattcggcgttcgat
tcgttcaattgacaccgtctggttaaTTTGATCccttcatttttctaaaa
tataacgcttttttaaaattaaaaaatagctcaaaatttaagcctttcct
ctttctgatgGTGAAAAGTCTAGATTTATAACATTCTTAGTTTTCTCACA
ACCTTGCTTCAAGCTTGTACACTatttttgaaacacccggtacCTGGAAA
ATTTTCTTACCCATTGAGACCCAGATAAATGTACCCAACGCTTCACTTTT
AAACTACATTGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026676XLOC_026676Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042909-exon-sc0003769-1491911889:972..1685TCONS_00042909-exon-sc0003769-1491911889:972..1685Clytia hemisphaericaexon
TCONS_00042909-exon-sc0003769-1510915933:972..1685TCONS_00042909-exon-sc0003769-1510915933:972..1685Clytia hemisphaericaexon
TCONS_00042909-exon-sc0003769-1575043694:972..1685TCONS_00042909-exon-sc0003769-1575043694:972..1685Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003769supercontigsc0003769:972..1685 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.140506	0	1.11362	0.155643	0.28422	0.224595	0.361285	0.422788	0.118402	0.219989	0.0711757	0.0935762	0.887738	0.63079	0.159568	0.214051	0.0527386	0.0540554	2.46445	1.40666	0.339623	0.496968	0.241652	0	0.226282	0.269269	0.385323	0.30842	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top