TCONS_00042904 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042904
Unique NameTCONS_00042904
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1205

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042904 ID=TCONS_00042904|Name=TCONS_00042904|organism=Clytia hemisphaerica|type=transcript|length=1205bp
aaaaaaacatggctgaTAAAATAATTGCTGCCCCCAAAATTACTGAAAAA
GGCTTCATTGCAATGAAGATTTGTCCGAAATGCACGAAGAAGATTGGGGT
GGCATCTAAAAGTTGTGCCCACTGTGGCCACAttataacaaaaaaagaaa
gtcaGGTAAAAGAACGAAGTGGGACGATAAATGCATCGAGAAGAAAGGGG
GACATAAAAAAGATCATGGATGATTTACATAAAAATGATGATTATGATGC
CGTTACCTTTTTTTACCACAAGACAAAACGTAAAAGCTgccgaaaaagaa
gaagaaaaagaaaaaaacggaTCAGCGACATCGACATCGACACCGACATC
GACACAGGCAGAGACACAGGCAGAGACAGAAACAACGACAGAGACAAAAA
CAGGAACTTGGACAGAGACAGCGACAGAGACTGCGACAGCGACTGCGACA
GAGACAGCAACAGAGACCATCGAGATGGTATTCGAAATTCAGTCGGAAGA
CGAAAGAGAAGAGGAGGaagagaaagaagatggaaacgAAAGACAGGCTT
TTTATAGCGACATCGACAGAGACTGCGACAGAGACAGAGACGACGACAGA
GACTGCGACAGCGACTGCGACAGCGACTGCGACAGAGACAGCGACAGCGA
CAGCGACAGAGACTGCGACAGAGACGACGACAGAGACTGCGACAGAGACG
ACGACAGAGACTGCGACAGAGACAGAGACTGCGACAGAGACGACGACATC
GACAGAGATGACGACAGAGACTGCGGCAGAGACAGTGACAGAGACGACGA
CAGAGACAGCGACAGATTAATAATGCGTAATATTATTTGAAAACGCTTTG
CTTTTACTCGTGCAATTTATCCTAAAAAGTCCTCTTCCCGATACGATTGT
TAGTACGAATTTCATCATATTCGAAATTAAAACTTAGCAAGtctagattt
tatttttgcatcTTTTGTGATTCGCAaggtatttttattgttttcttcaa
atttttagcTTCTGATTTTTATGACATTATCATGCCaagttttaaatgta
catacgcAGTCGTTTTTAaccataaaaaagaaattacatATTAGATactt
tattttatatttatatatttatatatataCTTTTTAACAAGCGAACAAAG
TTGCTATCTTTTTTATCAAGTGTATacgagaaaagaaaaaaagaaatttc
gaaaa
Run BLAST on NCBI

transcript from alignment at sc0003767:2890..6238-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042904 ID=TCONS_00042904|Name=TCONS_00042904|organism=Clytia hemisphaerica|type=transcript|length=3349bp|location=Sequence derived from alignment at sc0003767:2890..6238- (Clytia hemisphaerica)
AAAAAAACATGGCTGATAAAATAATTGCTGCCCCCAAAATTACTGAAAAA
GGCTTCATTGCAATGAAGGTAATAAATAAATTATATATTGTTCAATTTCT
TTCAAAACTAAGTCTTTCAAAACTAAATCGACCTTATTATTTAACATTTT
TTTAATGTTGGAGACAAGAAGTTGAAACGTATAAGTTGGTTTCTTTAAAT
ACAGTATATGATTTTTCTCTTACAGATTTGTCCGAAATGCACGAAGAAGA
TTGGGGTGGCATCTAAAAGTTGTGCCCACTGTGGCCACATTATAACAAAA
AAAGAAAGTCAGGTAAAAGAACGAAGTGGGACGATAAATGCATCGAGAAG
AAAGGGGGACATAAAAAAGATCGTAAGTTTTCCAAACAGCATTTTTATCT
CACTACCCAAAGTTTGTCTTCTATCTATGCATGTAAACTGGTTTGTCAAT
GAATTTGTCTTGCATGTTCGTATTGTTTTAGTCTACGGTAGATTGTATAT
TTATTAATTTCTTGATACACAGTAACTGACAAAGAGGTAATTAGCTATTT
TTTATTGTCAGTGTCACTTTTTAACGAACATAAAAGTACTGGGCAAGAAG
GGCTTAATATATCCAACAAACAGTACCAAGTACCATCCCTTCAGAAGAGC
ACACGTTTTAGGCAAAAAGACATTGGTAATAATTTTCAGAGAACTCTGTC
TGAAACTTAGGTATAACCTTTTACACCATATTCCTCTTGTGATACCTTCC
TTAATTAATTACTATTAGTTAATTAATTAATTAATCGTTGTAAATATTAT
ACAGAATGTAAAATTTTATTTTTACTATCATCTTTCAGATGGATGATTTA
CATAAAAATGATGATTATGATGCCGTTACCTTTTTTTACCACAAGACAAA
ACGTAAAAGGTACAACATTTTTAACCCCAACCAGCATGTTTAATTTCATG
TAGACAAAACTTTCATTAACCGTTTCAAATTATTGGAAACTGATGTGAAA
TAGACATCTCATATCGGGCGGGTGTCCAGGATTTTACTGGCATAAGGTTT
AAAGGTTTATTTTGTTCTCAGAGGAATTCATACTGCTCTAACCCCACTTT
CTAATAAGTATTTTAAAAATTAATTGTATTTTTATACTACCCTCGAGGGA
AATAAACTTTCGCAACGAGAAACTTTTGCAAACAATATTTTAATCACAAA
CGGGCAATTCTTTTTTTTTCATCGCAGAACCTGTGATTGAAACAGTTAGT
TCTTTTATTAAATTCACAAAAATTTCTTTCGCAAAAACTCAATTTTGGAG
AGCTTGAATTTCTATACTTACTTTCTACTTTTAGAACCTTCCAATTCCGG
TGTACGGAAGGCCCCATGAAGCGAGCCCTATCAAACCAGGGAACTCTGAA
AACACTGAGAAGTGTTTTTGAGAACCTTGTATCTGGTAAGATATAATTCA
TTTGTAATCATATTTTTTTCCTTTTCCTTTTTAATTCATGTTAATATTAT
ACGGCAATTGAGCAACTTACAAACAGTTTTACTTTACAAGTAAAATATTT
TCACTGAAATTTTTTCAAAACAATAATTACCCGCGAATCGGAAACATACA
GTTTTTACGGATGGATAGTAGTATATAAAGAAAATGGGTTTTCTTTGTTC
GTTTCCAAATTTCGTGAATTTGAGTTTTGCGAAGAAAATTTTATGATCGT
GAATCTTTTTTATACTTCGTGTGTCAAATATCGATAAATTAATTTTATTG
TTTGGTCCCTTTTTATGATGCGCGAGATTTTCTACCGTAGCTCTATTTTC
GGAAAAAAATAGCCGAAGGTTCTTCGAAATAGATAGTCGAAATAAAAACA
AATGGTTCAACATCCTTAAAATCTATTCTCAAATAACTTTTAGCTGCCGA
AAAAGAAGAAGAAAAAGAAAAAAACGGATCAGCGACATCGACATCGACAC
CGACATCGACACAGGCAGAGACACAGGCAGAGACAGAAACAACGACAGAG
ACAAAAACAGGAACTTGGACAGAGACAGCGACAGAGACTGCGACAGCGAC
TGCGACAGAGACAGCAACAGAGACCATCGAGATGGTATTCGAAATTCAGT
CGGAAGACGAAAGAGAAGAGGAGGAAGAGAAAGAAGATGGAAACGAAAGA
CAGGCGTTTGATCTTTTTAATTTTTAATTTGTCTGATTAATTTTGGCGAT
TTTTAGCCCTTTTCACGAAAATCTGTACCTTGAAATGTGTGGAATCGTAT
TTTAACAAAAAAGAGGTTTAAAGGGTCATTCGTCGTTTGCAAAACGCAGA
ACCAGCAAGAACCAGCTGGTGCGTTTTGACACGCCGCATTAACTAATTCT
TCAAGTAGGGATTGTATTTATTCGAATAGCCCAATCTGAGATCTAAAGAT
AGTCTGGGTGTGGATTGAGGATCGAGTTTATGCAGGACTATCATGATACG
ATTGCACCGATGATACAACCTGAATGATAAGTGAATATAAAAGTAATTAC
TTCTTTCTACATTATAGAGGAGCTATAGTTCTTAGGCGATTTACAAACAA
CGCATTCGCGAAACTAAATCTGTGCAGAATTTCTCAAACTGCACACTCGC
AAAATTAAATCCGCCCTCGTAATTCCAACTCGTGAAAATTAATCAGATTA
AAGTATTTTTTGTTTAGACCTTTCCCTTCCGTTTTATCATAGTTTTTATA
GCGACATCGACAGAGACTGCGACAGAGACAGAGACGACGACAGAGACTGC
GACAGCGACTGCGACAGCGACTGCGACAGAGACAGCGACAGCGACAGCGA
CAGAGACTGCGACAGAGACGACGACAGAGACTGCGACAGAGACGACGACA
GAGACTGCGACAGAGACAGAGACTGCGACAGAGACGACGACATCGACAGA
GATGACGACAGAGACTGCGGCAGAGACAGTGACAGAGACGACGACAGAGA
CAGCGACAGATTAATAATGCGTAATATTATTTGAAAACGCTTTGCTTTTA
CTCGTGCAATTTATCCTAAAAAGTCCTCTTCCCGATACGATTGTTAGTAC
GAATTTCATCATATTCGAAATTAAAACTTAGCAAGTCTAGATTTTATTTT
TGCATCTTTTGTGATTCGCAAGGTATTTTTATTGTTTTCTTCAAATTTTT
AGCTTCTGATTTTTATGACATTATCATGCCAAGTTTTAAATGTACATACG
CAGTCGTTTTTAACCATAAAAAAGAAATTACATATTAGATACTTTATTTT
ATATTTATATATTTATATATATACTTTTTAACAAGCGAACAAAGTTGCTA
TCTTTTTTATCAAGTGTATACGAGAAAAGAAAAAAAGAAATTTCGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026674XLOC_026674Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042904-exon-sc0003767-1575043694:6171..6238TCONS_00042904-exon-sc0003767-1575043694:6171..6238Clytia hemisphaericaexon
TCONS_00042904-exon-sc0003767-1575043694:5867..6013TCONS_00042904-exon-sc0003767-1575043694:5867..6013Clytia hemisphaericaexon
TCONS_00042904-exon-sc0003767-1575043694:5330..5400TCONS_00042904-exon-sc0003767-1575043694:5330..5400Clytia hemisphaericaexon
TCONS_00042904-exon-sc0003767-1575043694:4084..4345TCONS_00042904-exon-sc0003767-1575043694:4084..4345Clytia hemisphaericaexon
TCONS_00042904-exon-sc0003767-1575043694:2890..3546TCONS_00042904-exon-sc0003767-1575043694:2890..3546Clytia hemisphaericaexon
TCONS_00042904-exon-sc0003767-1510915933:6171..6238TCONS_00042904-exon-sc0003767-1510915933:6171..6238Clytia hemisphaericaexon
TCONS_00042904-exon-sc0003767-1510915933:5867..6013TCONS_00042904-exon-sc0003767-1510915933:5867..6013Clytia hemisphaericaexon
TCONS_00042904-exon-sc0003767-1510915933:5330..5400TCONS_00042904-exon-sc0003767-1510915933:5330..5400Clytia hemisphaericaexon
TCONS_00042904-exon-sc0003767-1510915933:4084..4345TCONS_00042904-exon-sc0003767-1510915933:4084..4345Clytia hemisphaericaexon
TCONS_00042904-exon-sc0003767-1510915933:2890..3546TCONS_00042904-exon-sc0003767-1510915933:2890..3546Clytia hemisphaericaexon
TCONS_00042904-exon-sc0003767-1491911889:6171..6238TCONS_00042904-exon-sc0003767-1491911889:6171..6238Clytia hemisphaericaexon
TCONS_00042904-exon-sc0003767-1491911889:5867..6013TCONS_00042904-exon-sc0003767-1491911889:5867..6013Clytia hemisphaericaexon
TCONS_00042904-exon-sc0003767-1491911889:5330..5400TCONS_00042904-exon-sc0003767-1491911889:5330..5400Clytia hemisphaericaexon
TCONS_00042904-exon-sc0003767-1491911889:4084..4345TCONS_00042904-exon-sc0003767-1491911889:4084..4345Clytia hemisphaericaexon
TCONS_00042904-exon-sc0003767-1491911889:2890..3546TCONS_00042904-exon-sc0003767-1491911889:2890..3546Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003767supercontigsc0003767:2890..6238 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.633567	0.708705	1.30581	2.7173	0	0	0	0	5.65637e-08	0	2.0019e-08	0	1.89566e-08	0	0	0	0	0	0	0	6.68556	5.80872	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042904 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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