TCONS_00042898 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042898
Unique NameTCONS_00042898
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042898 ID=TCONS_00042898|Name=TCONS_00042898|organism=Clytia hemisphaerica|type=transcript|length=283bp
ATCAAAACCGTTGAAGTAGTTCACCATAAAACATGCTTCGTTGTCAATCA
AATCGTTTAATCCTTGCATGAAGAAACGGTGACCAAAAGTATAATCGTAA
ACATCCGCATCCTCGTTAATGCTAATGAAGGTGACATTCCTGAACTCAAA
ACAACTTAACATTGAAAAGTCTTGGAAATTCTGCACAACACCATTTGAAG
CAGTAAAATAAACACATTCTGATAGAACGAGTAACTGGATTGCAAGAAAC
ATGTTTGTCCTCTTCTTATTTTGTCTTGCAAAC
Run BLAST on NCBI

transcript from alignment at sc0003762:8499..8781

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042898 ID=TCONS_00042898|Name=TCONS_00042898|organism=Clytia hemisphaerica|type=transcript|length=283bp|location=Sequence derived from alignment at sc0003762:8499..8781 (Clytia hemisphaerica)
GTTTGCAAGACAAAATAAGAAGAGGACAAACATGTTTCTTGCAATCCAGT
TACTCGTTCTATCAGAATGTGTTTATTTTACTGCTTCAAATGGTGTTGTG
CAGAATTTCCAAGACTTTTCAATGTTAAGTTGTTTTGAGTTCAGGAATGT
CACCTTCATTAGCATTAACGAGGATGCGGATGTTTACGATTATACTTTTG
GTCACCGTTTCTTCATGCAAGGATTAAACGATTTGATTGACAACGAAGCA
TGTTTTATGGTGAACTACTTCAACGGTTTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026668XLOC_026668Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042898-exon-sc0003762-1491911889:8499..8781TCONS_00042898-exon-sc0003762-1491911889:8499..8781Clytia hemisphaericaexon
TCONS_00042898-exon-sc0003762-1510915933:8499..8781TCONS_00042898-exon-sc0003762-1510915933:8499..8781Clytia hemisphaericaexon
TCONS_00042898-exon-sc0003762-1575043694:8499..8781TCONS_00042898-exon-sc0003762-1575043694:8499..8781Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003762supercontigsc0003762:8499..8781 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.463763	0	0	4.4894	3.54759	4.28001	1.71724	0.80152	0.496406	0	0	9.64314	2.04117	1.39279	2.74545	0.357014	0.731856	6.5378	10.1314	0	0	0	0	0.510607	1.04086	0.652111	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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