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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042897 ID=TCONS_00042897|Name=TCONS_00042897|organism=Clytia hemisphaerica|type=transcript|length=478bp
ATATCGCGCCATGCGGAGTTAATTTTTTCGTCAGGCTAGAAAGCAAAATA
TCACGGGCTAGCGGGAATTCAATCAATGACCTCTATTGAGTAGCCAATCG
ATGACGGTCGCGTCTATTTTGTAAACATTAGATTTTCGACGAGTCATTTT
TTACTGGATACCCTTTCtccctctcaaattttgaatcaTGAAGCCTTCAA
AGGCTTTTTATTGCATGCTTCAGTTCATTTTGTTACAAATTGTCAGATGT
AAAGATGAATTCCAACATGTGACATGTGGTTCatcattgaaattatttaa
caatagacaaaacatacgattacATTCTCATGATGTCAAATATGGATCAG
GAAGTGGTCAAcaggtattttattttttttaactacCGTACCATTTGGTC
AACAGGTATTTTATTATTTAACTAccaattttgcaattttttgacctgat
aacagatgtcattcccagtcctttcaAA Run BLAST on NCBI transcript from alignment at sc0003760:4978..8910+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042897 ID=TCONS_00042897|Name=TCONS_00042897|organism=Clytia hemisphaerica|type=transcript|length=3933bp|location=Sequence derived from alignment at sc0003760:4978..8910+ (Clytia hemisphaerica)
ATATCGCGCCATGCGGAGTTAATTTTTTCGTCAGGCTAGAAAGCAAAATA
TCACGGGCTAGCGGGAATTCAATCAATGACCTCTATTGAGTAGCCAATCG
ATGACGGTCGCGTCTATTTTGTAAACATTAGATTTTCGACGAGTCATTTT
TTACTGGATACCCTTTCtccctctcaaattttgaatcaTGAAGCCTTCAA
AGGCTTTTTATTGCATGCTTCAGTTCATTTTGTTACAAATTGTCAGATGT
AAAGATGGTAAGTTATTTTATTTCTGCTAGTTTTTAGTCCCTCCATCACG
CATCAGTCAGTCCAGTTGAATTCCGCACAAAcggaattaaaaaaaaccct
ttttaacctttttaacttttttgttctcattcaaaatgaccggtcANAGC
AAAAAcggaattaaaaaaaaccctttttaacctttttaacttttttgttc
tcattcaaaatgaccggtcAGTAATAGGAGAATTAGAGAACCTCTGCCGC
CTTACCTGCCTATCGCCCGatgagattaacaaataacgagtgtgtaactt
gccgcgcagaaaaagtgacgtcaaacgcgcTCGACAtacatcgttttgcc
actaatttggtcttcttcgttccagacattcgcgtTGTGtattccactac
agatttttttcatatttcgatttaaaagcctactctgtgcgaaagagaaa
ttgtgtattttttaatacgccgttgaCTTTGACTTTGAAGGTTCGGTGTG
AAATAATGTGCCatcccagaaaatttttgttaactACCCCTGTCGGACGa
cgttaattttttaattttttctagcctcagaaataatttttatttttcca
gtaGGGCGgcaatctaaaatatgttccgttcgcgtcgcccgaccaactca
ccttcaaaacataaatcccGAGTCGgacaagttgaaaaaatgtcggaaaa
agtttttaatagctaagcacttctttgtactttgaatcatcattcgctaa
aggccggtttccacttgcgcgcgctacgATCGCACTTttgggcttcaatc
ctttttgcttggaaaaaagattacgtcataaaaatgtagcgcgcgcttga
aaaaaaaaattgaacacatttcaacttttttcaaccgttacgtcagttcg
cgccaatggagttgcttcatttttcttttgaccaatagcctggaagcttt
gctcgaaaaagcgcaatcgaagcgcgcgcaagtggagaccggccctAAGA
GTTTTTGTTACTTAccacattgagtcccgtttgagttttttcatgcaccc
ttattgaaattttcaagtcgaaATACGGCGACACGGTAGGGCCAATACCC
CCGAGATCCGAAAATAAGGTCCGCTTTTAAGGTTCATACATGCGTTGCGC
ACATTGAATTTGgtaaatcaaagatggcggcaagagattttgttgattgc
cgacttgattcttTGGGATTCATTAGATTTTAAAAACCCGACAAAAtcta
ctaccgaccgaccgaccgactggatttgaagttgttttataacgcgaaca
gaacatattttagatAGTCGCCtagtcagtgtagacctaactcttcatac
aaaaattacgggaaacgcatatttggactttggaccctatgctgcactca
agcacttgagccaaaatcccgcaaaggcgggacaaaaatcagttttttga
agtttgcaaaagaAACGCCACatacatagaagatctttcaaattcagtat
gtgaatagagcagtaaaaaatacaacttttctatttttccttttttttgc
aaaagttctaggaatgaaaataaagggataatgataattgaatactagta
tccattgatgatccacggcactatcgtaaagctagaatcgcttcgcgtac
tcttcgcttgagaaaatgattgacagattgaagtttttcatccccacGGT
GTGCGCCGCGTgggagctcgggcgctctgcgagagttcttggctcaatcc
tcggaTCCCACTAAAAATGgcagactgagctgtgatagatcatttcgatg
gaagttgtatgaatgtttacaaggctcttgacagaatattctttgtttta
ttgtcaatgatgacagtgccgttataaattttgttagatctgacaaattg
atgtttgtaagtgcactttatagttttgattcccattgaagaatcatatt
ctggttttcatgttattagatgctgttttagagctttagagctacgcTTT
TAGTGGTGAAAATCCATGTatatacttttgcaaaatgcatcagaaattcc
actcttttttgccttttttaattcaattgtaCATTTtattctctcgcctt
ggaaattttaaattttggtgaaaacttttgccctcagaaatcctgtgtcg
tccgcccccttgttacagacaaattctggaatggcccgaTGGTGGCTGAA
TTttcgtcccatgttttgtcagatagtcccaagttagaccAGTTGACAGT
ACACGTGCGTTTGTTattaagttgaagttggtttgatattctatGTTTGA
Tataaaccttttttcaaagaggacgtcctgttgaataattatgtagtcca
gccataaaaaacaatgatagagccatgcataattactgtatcatgcatat
tgtaataattatgcatggttttatcattgtttttctgctggactacataa
ttattcaacagggtggcctctttgaaaaaaggtctattcgatattcgttt
gataatcgtttgatattctcaaattagcgttttgaagtttttgtgactac
ttttggaattggaaactattggaagccaatagagtttattctcaagggtg
tctgtgcaaaatttcagcgctcttcgtcgcagtgtgctccctctaaaatt
GTTAAACTGCAAATTCTAAAATATGCAAATATGACAACTTGGGCTACTGT
GAGGGAGAGCGGTTACTTTTTAGTTTgcaaactattggaagccaatagag
tatGTCGCCAAGAGTAATTGTGCAAAATTTGACCGCTCTCCGTAGCAGTG
TTCTCCCTCTAAAATTGCTAAAGTGCAAAATCTGAATTATGCGAATATGA
CAACAGTACTGTGATGGAGAGcggtcaaatttggcacaaTTACTCTTGGC
AACATACTCTATTgatattggcttccaatagtttgcAAACCCAAAAGTAA
TCGTAATTTGTTTACAAAACCACGGTACAGATTTGGCGCAATTAAATTGA
AGGtttctgaaaataaaacatcaattttaaaAGGGGTTACACTCAACTGA
GTCTCGTGTTGGCAAAATGAAAAGGATTCTATACCAAACCTGTTAGCTAT
GTGTAGGTATAGACTTAGAGGAGGTTTAAGGCTATCCTTATCATAAAAAT
GATGGTAAAACAGATCAAAAGTCAACATACTGGAAATCTtgtattgatga
cgtcatttaggtTTTTTaatatgcaaaaaattgacactgCAACAGGGact
tttgttttaattaaaatgtgtcagtttaatttttcataaattcctttaga
agttttctttttttaggctAATTATCCTATCTTATGTCTTATAGCCTTTT
TGCTAGATATGATGTTATTTTGAATGATTAAAATCTGTAGTTTGCAATCA
AATGTCTTTGAGTCATACAAAATAAAACTTTCTCTCTTTTGACTAATGTC
CTTCTTTTATAGAATTCCAACATGTGACATGTGGTTCatcattgaaatta
tttaacaatagacaaaacatacgattacATTCTCATGATGTCAAATATGG
ATCAGGAAGTGGTCAAcaggtattttattttttttaactacCGTACCATT
TGGTCAACAGGTATTTTATTATTTAACTAccaattttgcaattttttgac
ctgataacagatgtcattcccagtcctttcaAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042897-exon-sc0003760-1491911889:4978..5234 | TCONS_00042897-exon-sc0003760-1491911889:4978..5234 | Clytia hemisphaerica | exon |
| TCONS_00042897-exon-sc0003760-1510915933:4978..5234 | TCONS_00042897-exon-sc0003760-1510915933:4978..5234 | Clytia hemisphaerica | exon |
| TCONS_00042897-exon-sc0003760-1575043694:4978..5234 | TCONS_00042897-exon-sc0003760-1575043694:4978..5234 | Clytia hemisphaerica | exon |
| TCONS_00042897-exon-sc0003760-1491911889:8690..8910 | TCONS_00042897-exon-sc0003760-1491911889:8690..8910 | Clytia hemisphaerica | exon |
| TCONS_00042897-exon-sc0003760-1510915933:8690..8910 | TCONS_00042897-exon-sc0003760-1510915933:8690..8910 | Clytia hemisphaerica | exon |
| TCONS_00042897-exon-sc0003760-1575043694:8690..8910 | TCONS_00042897-exon-sc0003760-1575043694:8690..8910 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003760 | supercontig | sc0003760:4978..8910 + |
Blast
The following BLAST results are available for this feature:
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