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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042894 ID=TCONS_00042894|Name=TCONS_00042894|organism=Clytia hemisphaerica|type=transcript|length=1270bp
TGCGCACTGGAAAGGTTAATTAAAGAAATGATTTGTATACTATAGTTTGA
TGGTACATTATTAGACCTTTAACGCCAACCCTTATTGGGGTTATTTTCGG
GCATTAAAAGAACTGGCATTTAAAAGGGCTGATATATTCAATGTTTCACA
AAAATCAGTGATTCCAACTACTTAATACCAACAAATTTTAGtcaatttac
tttttttaggccttaaattaattaaattgtGATTTTTGTACGTTTTGGTG
TTATATTTACGACCCTAATAGGCATAatcccaaaattaggctgtggggTA
AAATGGCAGGGCCAAAAAGATACTTAGTTAGAAACTCAATTAAAATTGAC
TATCAAACTGTATCAAATAATAAGGGTACCAGACAGTCATCAATTCTCTT
TAATTTTCACCTCATTCTTCAAAGCTCTTTGAAAGTTTGTAGATTTGTAA
TCTTGATCATTATGCACAAATTAGATTGAACCCATGAAGCTTCAAGCTGA
ATGTCGCTTTAAACAGGACACAATTTATACAAACTTCAATCATATCGACA
GATTGTACCTAGCCCACTTAGTGTTAAGGCAAGCACCAGTGAGCTCATCT
GAAGTTTAATATTGTTAAAAAGTGAAGTTGATTTTAAGTAAAACAGGACA
GGAaatatatttatattatatgaatttgatttatttaattGCATCTAATA
TTCTTTTGATAATGATTGAGTAGAGTCCAGTATTTATTTCTTGTCTTCAT
CTCTAAAACTTTTTACTCACACAGGTGACAATATGAAAGTGAAGATGAAA
CAACGTTGAGCTGATATCAAAGAACTTGGGTTTGCAACTATCCAGGTGtt
tctttttacaatttttcattATGGCTTCTAAGCTCGTAAACTCATGGTTT
GATGAGTGTGTTTCATTTAATGAGAACAAGTACGTCTTGTTGAACAAGTT
GAAAGAAAGCTTCAGGCATTTCCATTTTCCTTTTGGTGAGGAGGTTGATA
ATGATTgtttagaaaatgaaattaaaagaattttcatGGAGAAGGGTGTC
AAGttttcttcgaaaattttcaggaaacatggaaagaaatttttgaaggt
ATTTAGAGTCGAGTTGAGGAGGGATTTAAGCATTGCCCATAAAGTTTCTG
TGATTAAAACGGTTGGAACATGTCAAGACCTATCCATGTCCCATGAAGGA
ATGAATGCTGAAAGTGTAGCTGACGAAGAAACAATGTCCAACTGGGACAA
TGATTGTTTGCCTTTAGAAA Run BLAST on NCBI protein sequence of TCONS_00042894-protein >TCONS_00042894-protein ID=TCONS_00042894-protein|Name=TCONS_00042894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MASKLVNSWFDECVSFNENKYVLLNKLKESFRHFHFPFGEEVDNDCLENE
IKRIFMEKGVKFSSKIFRKHGKKFLKVFRVELRRDLSIAHKVSVIKTVGT
CQDLSMSHEGMNAESVADEETMSNWDNDCLPLE Run BLAST on NCBI transcript from alignment at sc0003757:1..1270 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042894 ID=TCONS_00042894|Name=TCONS_00042894|organism=Clytia hemisphaerica|type=transcript|length=1270bp|location=Sequence derived from alignment at sc0003757:1..1270 (Clytia hemisphaerica)
TTTCTAAAGGCAAACAATCATTGTCCCAGTTGGACATTGTTTCTTCGTCA
GCTACACTTTCAGCATTCATTCCTTCATGGGACATGGATAGGTCTTGACA
TGTTCCAACCGTTTTAATCACAGAAACTTTATGGGCAATGCTTAAATCCC
TCCTCAACTCGACTCTAAATaccttcaaaaatttctttccatgtttcctg
aaaattttcgaagaaaaCTTGACACCCTTCTCCatgaaaattcttttaat
ttcattttctaaacAATCATTATCAACCTCCTCACCAAAAGGAAAATGGA
AATGCCTGAAGCTTTCTTTCAACTTGTTCAACAAGACGTACTTGTTCTCA
TTAAATGAAACACACTCATCAAACCATGAGTTTACGAGCTTAGAAGCCAT
aatgaaaaattgtaaaaagaaaCACCTGGATAGTTGCAAACCCAAGTTCT
TTGATATCAGCTCAACGTTGTTTCATCTTCACTTTCATATTGTCACCTGT
GTGAGTAAAAAGTTTTAGAGATGAAGACAAGAAATAAATACTGGACTCTA
CTCAATCATTATCAAAAGAATATTAGATGCaattaaataaatcaaattca
tataatataaatatattTCCTGTCCTGTTTTACTTAAAATCAACTTCACT
TTTTAACAATATTAAACTTCAGATGAGCTCACTGGTGCTTGCCTTAACAC
TAAGTGGGCTAGGTACAATCTGTCGATATGATTGAAGTTTGTATAAATTG
TGTCCTGTTTAAAGCGACATTCAGCTTGAAGCTTCATGGGTTCAATCTAA
TTTGTGCATAATGATCAAGATTACAAATCTACAAACTTTCAAAGAGCTTT
GAAGAATGAGGTGAAAATTAAAGAGAATTGATGACTGTCTGGTACCCTTA
TTATTTGATACAGTTTGATAGTCAATTTTAATTGAGTTTCTAACTAAGTA
TCTTTTTGGCCCTGCCATTTTAccccacagcctaattttgggatTATGCC
TATTAGGGTCGTAAATATAACACCAAAACGTACAAAAATCacaatttaat
taatttaaggcctaaaaaaagtaaattgaCTAAAATTTGTTGGTATTAAG
TAGTTGGAATCACTGATTTTTGTGAAACATTGAATATATCAGCCCTTTTA
AATGCCAGTTCTTTTAATGCCCGAAAATAACCCCAATAAGGGTTGGCGTT
AAAGGTCTAATAATGTACCATCAAACTATAGTATACAAATCATTTCTTTA
ATTAACCTTTCCAGTGCGCA Coding sequence (CDS) from alignment at sc0003757:1..1270 >TCONS_00042894 ID=TCONS_00042894|Name=TCONS_00042894|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at sc0003757:1..1270 (Clytia hemisphaerica)
TTCTAAAGGCAAACAATCATTGTCCCAGTTGGACATTGTTTCTTCGTCAG
CTACACTTTCAGCATTCATTCCTTCATGGGACATGGATAGGTCTTGACAT
GTTCCAACCGTTTTAATCACAGAAACTTTATGGGCAATGCTTAAATCCCT
CCTCAACTCGACTCTAAATaccttcaaaaatttctttccatgtttcctga
aaattttcgaagaaaaCTTGACACCCTTCTCCatgaaaattcttttaatt
tcattttctaaacAATCATTATCAACCTCCTCACCAAAAGGAAAATGGAA
ATGCCTGAAGCTTTCTTTCAACTTGTTCAACAAGACGTACTTGTTCTCAT
TAAATGAAACACACTCATCAAACCATGAGTTTACGAGCTTAGAAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042894-exon-sc0003757-1491911889:1..1270 | TCONS_00042894-exon-sc0003757-1491911889:1..1270 | Clytia hemisphaerica | exon |
| TCONS_00042894-exon-sc0003757-1510915933:1..1270 | TCONS_00042894-exon-sc0003757-1510915933:1..1270 | Clytia hemisphaerica | exon |
| TCONS_00042894-exon-sc0003757-1575043694:1..1270 | TCONS_00042894-exon-sc0003757-1575043694:1..1270 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003757 | supercontig | sc0003757:1..1270 . |
Blast
The following BLAST results are available for this feature:
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