TCONS_00042893 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042893
Unique NameTCONS_00042893
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length878

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042893 ID=TCONS_00042893|Name=TCONS_00042893|organism=Clytia hemisphaerica|type=transcript|length=878bp
tccgactttcatattattcctatctctaaagaagggtgttgaaattagaa
gacggatgtcgagattagaccaacttacggtattaaTCAAACATTCAATC
agtcaagaacaagtgcaaACTAGGATACCTTCGGCAATCTCTCCTAGAGT
CCTACTTAGGAGAGTATCTTAAAAATTGGATacaaaaaagtatccaaaat
agcaatcaacatcctaattaggttactaaaaaccaaaaaacctgTACTTT
TCACCAACCAGAGACATCTGCGCCATCTTACCACTTCCAAGATGTAAATA
ATAAGCAAATGAGATTGTGTACTGAATTTCATCGAGTTTGGCTGGCGGAA
TGCAAAACTATAGCCCAAAACACCACTCAAATGTGCTAACTAGCATACAC
GAACACTTTTTTTGCGCGAAAATCGGACCGTAGCAGGCTGTtccgtaaaa
agaaaaacaaatctttagctCGTGTTCGCAAAATTTTAGGCTCTGAACGG
CAGATTATTAGGGATGTTAATTTTCGAGGAACCCGCCAgagaaattattt
gaaattttggtcagtgGTGCAAATCTCGATGAAGAAAAAGTCTGCATAGT
TTTCCAAACGCGGATCGAAGCAGTAACCTAAAAAATTCAGGTCAAAGTGT
CTGCTCTCCTATTTAGGATACCTAAATCTCCAAATTAGGATACAACTCTC
CTAAGTAGGAGAGATTGCCGAcaggtatcctaatttgcacttgttcttga
ctGTCATTTGTGATCGCAAAGTAATCAATGGGCAGTTAcagaaaaaagta
ccattacagagtttttggacctaccccggtggaggtcctataaattaacc
tttgtccgttcgtctgttcgttcgttcg
Run BLAST on NCBI

transcript from alignment at sc0003756:4404..5281

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042893 ID=TCONS_00042893|Name=TCONS_00042893|organism=Clytia hemisphaerica|type=transcript|length=878bp|location=Sequence derived from alignment at sc0003756:4404..5281 (Clytia hemisphaerica)
cgaacgaacgaacagacgaacggacaaaggttaatttataggacctccac
cggggtaggtccaaaaactctgtaatggtacttttttctgTAACTGCCCA
TTGATTACTTTGCGATCACAAATGACagtcaagaacaagtgcaaattagg
atacctgTCGGCAATCTCTCCTACTTAGGAGAGTTGTATCCTAATTTGGA
GATTTAGGTATCCTAAATAGGAGAGCAGACACTTTGACCTGAATTTTTTA
GGTTACTGCTTCGATCCGCGTTTGGAAAACTATGCAGACTTTTTCTTCAT
CGAGATTTGCACcactgaccaaaatttcaaataatttctcTGGCGGGTTC
CTCGAAAATTAACATCCCTAATAATCTGCCGTTCAGAGCCTAAAATTTTG
CGAACACGagctaaagatttgtttttctttttacggaACAGCCTGCTACG
GTCCGATTTTCGCGCAAAAAAAGTGTTCGTGTATGCTAGTTAGCACATTT
GAGTGGTGTTTTGGGCTATAGTTTTGCATTCCGCCAGCCAAACTCGATGA
AATTCAGTACACAATCTCATTTGCTTATTATTTACATCTTGGAAGTGGTA
AGATGGCGCAGATGTCTCTGGTTGGTGAAAAGTAcaggttttttggtttt
tagtaacctaattaggatgttgattgctattttggatacttttttgtATC
CAATTTTTAAGATACTCTCCTAAGTAGGACTCTAGGAGAGATTGCCGAAG
GTATCCTAGTttgcacttgttcttgactGATTGAATGTTTGAttaatacc
gtaagttggtctaatctcgacatccgtcttctaatttcaacacccttctt
tagagataggaataatatgaaagtcgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026664XLOC_026664Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042893-exon-sc0003756-1491911889:4404..5281TCONS_00042893-exon-sc0003756-1491911889:4404..5281Clytia hemisphaericaexon
TCONS_00042893-exon-sc0003756-1510915933:4404..5281TCONS_00042893-exon-sc0003756-1510915933:4404..5281Clytia hemisphaericaexon
TCONS_00042893-exon-sc0003756-1575043694:4404..5281TCONS_00042893-exon-sc0003756-1575043694:4404..5281Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003756supercontigsc0003756:4404..5281 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.88286	1.85127	2.774	3.82769	2.75871	2.04686	1.90332	2.16616	1.77262	1.86637	1.59947	2.94413	1.40457	1.42052	1.18261	0.991068	1.32911	1.8055	1.11858	1.67783	0.987947	2.18098	0.529155	0.487517	2.32007	2.12751	2.87854	1.55248	1.5544	1.33691
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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