TCONS_00042874 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042874
Unique NameTCONS_00042874
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length629

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042874 ID=TCONS_00042874|Name=TCONS_00042874|organism=Clytia hemisphaerica|type=transcript|length=629bp
TCACTATTTGCAGTACAGATCAGCTACtgtggttttaattttttttcttt
aaagctacatttccaaaaatatgtGCATACTCAAACAAGGTTTGGTATGA
CTTGAATAAGCGCGCAAGTACAAATCCGGACACCAAAGAATTCAAAAGGT
CGGATAATATGACCTTAAGCTTTAGTCGCAATCAAAGACACTTATGAAGG
TTATCCAGGCCTTCGTGATCTCAATTGAGGGATCAGTACTTTTTTTAGAC
AGATAGTTTAGCTTCAAAGATTCTTAAGCTTTATAAAATGTGCATGTAAA
AAAATAGAtgtctatttctatttggttgagttgcaggaggctttgaggcc
tattttcttAACTATTATATAGTTATACTTTCAacgagcgccccgtcagc
acctttgACTAActactacccaattcccctcacatggttgacccaggcga
aggttcattcacttgccaagtgaactgctgtAAGTGGGAGAATTATTAAC
CTTAGTCCCTCTCCTGTgttgtgcagcaaccaaggtcaataaCCAAGTAA
ATATTTATATAACATCCgagcaaaattttttatcaaaatttcccAAATCA
CAAACCTGCGATATTCCAAGACAATGTCA
Run BLAST on NCBI

transcript from alignment at sc0003753:3325..3953

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042874 ID=TCONS_00042874|Name=TCONS_00042874|organism=Clytia hemisphaerica|type=transcript|length=629bp|location=Sequence derived from alignment at sc0003753:3325..3953 (Clytia hemisphaerica)
TGACATTGTCTTGGAATATCGCAGGTTTGTGATTTgggaaattttgataa
aaaattttgctcGGATGTTATATAAATATTTACTTGGttattgaccttgg
ttgctgcacaacACAGGAGAGGGACTAAGGTTAATAATTCTCCCACTTac
agcagttcacttggcaagtgaatgaaccttcgcctgggtcaaccatgtga
ggggaattgggtagtagTTAGTcaaaggtgctgacggggcgctcgtTGAA
AGTATAACTATATAATAGTTaagaaaataggcctcaaagcctcctgcaac
tcaaccaaatagaaatagacaTCTATTTTTTTACATGCACATTTTATAAA
GCTTAAGAATCTTTGAAGCTAAACTATCTGTCTAAAAAAAGTACTGATCC
CTCAATTGAGATCACGAAGGCCTGGATAACCTTCATAAGTGTCTTTGATT
GCGACTAAAGCTTAAGGTCATATTATCCGACCTTTTGAATTCTTTGGTGT
CCGGATTTGTACTTGCGCGCTTATTCAAGTCATACCAAACCTTGTTTGAG
TATGCacatatttttggaaatgtagctttaaagaaaaaaaattaaaacca
caGTAGCTGATCTGTACTGCAAATAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026657XLOC_026657Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042874-exon-sc0003753-1491911889:3325..3953TCONS_00042874-exon-sc0003753-1491911889:3325..3953Clytia hemisphaericaexon
TCONS_00042874-exon-sc0003753-1510915933:3325..3953TCONS_00042874-exon-sc0003753-1510915933:3325..3953Clytia hemisphaericaexon
TCONS_00042874-exon-sc0003753-1575043694:3325..3953TCONS_00042874-exon-sc0003753-1575043694:3325..3953Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003753supercontigsc0003753:3325..3953 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.35703	1.01099	1.35286	1.44868	1.19241	1.01349	0.664667	0.613024	0.601271	0.53735	0	0.90713	0.453937	0.418362	0.583497	0.477979	0.647892	0.720707	0.0947917	0.939633	0.512772	0.245097	0.510067	0.710689	0.666173	0.658319	0.466732	0.506426	1.62588	1.78125
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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