TCONS_00042866 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042866
Unique NameTCONS_00042866
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length332

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042866 ID=TCONS_00042866|Name=TCONS_00042866|organism=Clytia hemisphaerica|type=transcript|length=332bp
TCAGCGTTGGTGAAGTACTAAGTAAATACAGATCAGGGAAGATTCCTAAA
CCTTTCAAAATCATCCCATCCCTGGCGAACTGGGAAGAAGTTCTTTATTG
CACGGATCCAGACACGTGGACACCTGCTGCCATGTACCAAGCAACACGAA
TATTCACATCCAATTTGAACGCCAAAATGGCTCAAAGGTTTTTCAATCTA
GTGCTGCTGCCGCGCGTTCGTGACGACATCGCTGAATATAGAAGATTAAA
TTATCATTTATATATGtcTCTGAAAAAGTCTCTATTTAAACCTGCAGCAT
TTTTCAAAGGAATCCTTATACCACTATGTGAG
Run BLAST on NCBI

protein sequence of TCONS_00042866-protein

>TCONS_00042866-protein ID=TCONS_00042866-protein|Name=TCONS_00042866-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
SVGEVLSKYRSGKIPKPFKIIPSLANWEEVLYCTDPDTWTPAAMYQATRI
FTSNLNAKMAQRFFNLVLLPRVRDDIAEYRRLNYHLYMSLKKSLFKPAAF
FKGILIPLCE
Run BLAST on NCBI

transcript from alignment at sc0003744:3535..4920-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042866 ID=TCONS_00042866|Name=TCONS_00042866|organism=Clytia hemisphaerica|type=transcript|length=1386bp|location=Sequence derived from alignment at sc0003744:3535..4920- (Clytia hemisphaerica)
TCAGCGTTGGTGAAGTACTAAGTAAATACAGATCAGGGAAGATTCCTAAA
CCTTTCAAAATCATCCCATCCCTGGCGAACTGGGAAGAAGTTCTTTATTG
CACGGATCCAGACACGTGGACACCTGCTGCCATGTACCAAGCAACACGAA
TATTCACATCCAATTTGAACGCCAAAATGGCTCAAAGGTATGGAATGCGT
TGGTCTGTCGACTTATTATTGTAGTCCTGTATCAAATCAAACTTAAAGGG
ATAATTAGATGGTCTGAGATATTTGGCCGGCAGTAAGTTTTATATGGGCT
TGAGACCTCCACATGTTTGCGTAACTATTTTCCAAAGTCGAGATATCATA
ATTTGAGATTTCTGAAAATGGGTTCTCACACGGTTCTTACGTTGAAATTA
TATTGTTTTCTTACTAAAAGTCAAAAACTTGTAATTTAAATATCTCAACT
TTGGAAAATATTTAGGTAAAAATATTTTGATGTTTTGCTCAGGGCATTAA
AAAGATTACACATGCCAAATATCTCAAACCATCTGATAATCCCTTTAAAT
CATACTAAATTTAGAGTCGACTAGAACTAGACGTCAAAATCTCAAAATTA
TTGAAACTTTTTTTGGACCACTCGGTATAATCACCCATTGTTTCCTGGAA
GAACAAGATGAGAAAGTTTACTACTGTAAGCGATTAGCTTTCGCTCGTCG
TTTTTTATAGTCTTTTGTTGCAAATTTAGGGAACCCTGTCAAAGCTCCCC
TGCTCTATACTAGATAGGTAGTATTGTATTTGACAATTTTCCGACGATCG
AGCCAACACTGCTTCAAAAGCCTCTTTCTTTATTTACAGGTTTTTCAATC
TAGTGCTGCTGCCGCGCGTTCGTGACGACATCGCTGAATATAGAAGATTA
AATTATCATTTATATATGGTATGAATTAATTGCCTTACGATTCTTTATTA
ATTGTTTGAAAGGGTTTACCATACTCAAAGAAGGGATGGGGTTCTTGGTT
TCTGCGAATCGTTTTTTCTTTATTCTTAAAAGCAGACATGACCCTGTCCT
TTTCTTGTCCGATTTAAATTTCTACAGACTTTCTACATGGTGTAAATTGT
TTACATGCTGTCAACTCATCATTCAAAGGATCCCTGCTATTCGAACTTGG
CTTGGAATGTTTCTCTGTAAGAGTTGTAATCCTCCCCCTTAACTAGAAGA
AAGCATTTCCTGGAAGATGGAATTAACACTCTCTAGTGCACACTTTAGTT
CAACTGTGTAGGAATATCCATATCGGTTTTAAAAAGCTCTTTAAAGATCA
TCTTTTTTCTTTTCTTTCAGTCTCTGAAAAAGTCTCTATTTAAACCTGCA
GCATTTTTCAAAGGAATCCTTATACCACTATGTGAG

Coding sequence (CDS) from alignment at sc0003744:3535..4920-

>TCONS_00042866 ID=TCONS_00042866|Name=TCONS_00042866|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at sc0003744:3535..4920- (Clytia hemisphaerica)
TCTCTGAAAAAGTCTCTATTTAAACCTGCAGCATTTTTCAAAGGAATCCT
TATACCACTATGTGAGGTTTTTCAATCTAGTGCTGCTGCCGCGCGTTCGT
GACGACATCGCTGAATATAGAAGATTAAATTATCATTTATATATGAGCGT
TGGTGAAGTACTAAGTAAATACAGATCAGGGAAGATTCCTAAACCTTTCA
AAATCATCCCATCCCTGGCGAACTGGGAAGAAGTTCTTTATTGCACGGAT
CCAGACACGTGGACACCTGCTGCCATGTACCAAGCAACACGAATATTCAC
ATCCAATTTGAACGCCAAAATGGCTCAAAGTCTCTGAAAAAGTCTCTATT
TAAACCTGCAGCATTTTTCAAAGGAATCCTTATACCACTATGTGAGGTTT
TTCAATCTAGTGCTGCTGCCGCGCGTTCGTGACGACATCGCTGAATATAG
AAGATTAAATTATCATTTATATATGAGCGTTGGTGAAGTACTAAGTAAAT
ACAGATCAGGGAAGATTCCTAAACCTTTCAAAATCATCCCATCCCTGGCG
AACTGGGAAGAAGTTCTTTATTGCACGGATCCAGACACGTGGACACCTGC
TGCCATGTACCAAGCAACACGAATATTCACATCCAATTTGAACGCCAAAA
TGGCTCAAAGTCTCTGAAAAAGTCTCTATTTAAACCTGCAGCATTTTTCA
AAGGAATCCTTATACCACTATGTGAGGTTTTTCAATCTAGTGCTGCTGCC
GCGCGTTCGTGACGACATCGCTGAATATAGAAGATTAAATTATCATTTAT
ATATGAGCGTTGGTGAAGTACTAAGTAAATACAGATCAGGGAAGATTCCT
AAACCTTTCAAAATCATCCCATCCCTGGCGAACTGGGAAGAAGTTCTTTA
TTGCACGGATCCAGACACGTGGACACCTGCTGCCATGTACCAAGCAACAC
GAATATTCACATCCAATTTGAACGCCAAAATGGCTCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026649XLOC_026649Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042866-proteinTCONS_00042866-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042866-exon-sc0003744-1575043694:4734..4920TCONS_00042866-exon-sc0003744-1575043694:4734..4920Clytia hemisphaericaexon
TCONS_00042866-exon-sc0003744-1575043694:4003..4081TCONS_00042866-exon-sc0003744-1575043694:4003..4081Clytia hemisphaericaexon
TCONS_00042866-exon-sc0003744-1575043694:3535..3600TCONS_00042866-exon-sc0003744-1575043694:3535..3600Clytia hemisphaericaexon
TCONS_00042866-exon-sc0003744-1510915933:4734..4920TCONS_00042866-exon-sc0003744-1510915933:4734..4920Clytia hemisphaericaexon
TCONS_00042866-exon-sc0003744-1510915933:4003..4081TCONS_00042866-exon-sc0003744-1510915933:4003..4081Clytia hemisphaericaexon
TCONS_00042866-exon-sc0003744-1510915933:3535..3600TCONS_00042866-exon-sc0003744-1510915933:3535..3600Clytia hemisphaericaexon
TCONS_00042866-exon-sc0003744-1491911889:4734..4920TCONS_00042866-exon-sc0003744-1491911889:4734..4920Clytia hemisphaericaexon
TCONS_00042866-exon-sc0003744-1491911889:4003..4081TCONS_00042866-exon-sc0003744-1491911889:4003..4081Clytia hemisphaericaexon
TCONS_00042866-exon-sc0003744-1491911889:3535..3600TCONS_00042866-exon-sc0003744-1491911889:3535..3600Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003744supercontigsc0003744:3535..4920 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
43.4484	37.8059	28.7418	19.0476	20.0324	11.0017	23.6085	17.7606	24.2068	29.1962	26.589	27.2303	30.6998	37.7268	35.9589	33.4593	33.707	33.595	12.0361	10.4656	34.6071	36.4124	34.8429	34.5533	21.2651	28.7776	14.1167	11.869	29.7424	34.0808
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007955Bystin
Blast
[Close]
BLAST of TCONS_00042866 vs. Swiss-Prot (Human)
Match: BYST (Bystin OS=Homo sapiens GN=BYSL PE=1 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 4.475e-59
Identity = 85/109 (77.98%), Postives = 100/109 (91.74%), Query Frame = 3 
Query:    6 VGEVLSKYRSGKIPKPFKIIPSLANWEEVLYCTDPDTWTPAAMYQATRIFTSNLNAKMAQRFFNLVLLPRVRDDIAEYRRLNYHLYMSLKKSLFKPAAFFKGILIPLCE 332
            V EVLSKYRSGK+PK FKIIP+L+NWE++LY T+P+ WT AAMYQATRIF SNL  +MAQRF+NLVLLPRVRDD+AEY+RLN+HLYM+LKK+LFKP A+FKGILIPLCE
Sbjct:  188 VREVLSKYRSGKLPKAFKIIPALSNWEQILYVTEPEAWTAAAMYQATRIFASNLKERMAQRFYNLVLLPRVRDDVAEYKRLNFHLYMALKKALFKPGAWFKGILIPLCE 296
The following BLAST results are available for this feature:
BLAST of TCONS_00042866 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BYST4.475e-5977.98Bystin OS=Homo sapiens GN=BYSL PE=1 SV=3[more]
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