|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042864 ID=TCONS_00042864|Name=TCONS_00042864|organism=Clytia hemisphaerica|type=transcript|length=850bp
CACTGATCTGTTGGCTTCAGATTTCTTTTATTATGCTGGGAAATTTGTGG
CAATGGCTTTCTTCCATGGGGAAATTGGAATATGGAGTATTTCGCCTTGC
ATTCAAGAATACATCTTGTCTGGATCCAAAACAGCAGCAATTGCACTTGT
AGAAGCGAAAGATGTGGCTGACTCGGAAACCCAATCTATTTTGGAAAGTa
taaaGAAAGCTTGCACGGAAGAAGACTTTGCTGATCTTAATGGGGAAGAT
GGTATTTCATCACTGCTAAATGCTGCTggttttgtcaataaaatgttGGG
TACAAAAACCAAGGATCAAGCGTACCAGGAAATTTTGTTCTATGAGGTGA
TAACCAAAAGACGCGAAGAACTAGACGATTTCAGGAGAGGAATGAACGAA
GACTTTCAACTTGTTAATTTCGTCTACAAAAACAGATCTCTCCAGTCAAA
GCTTTTTCCGAAACtcaaagatttttgtttttctaaggAACAAATCATAA
ATTGTTTGTCTACACCCCCTAACTTGACGGAGAAACAAATTACTGCATTT
AActatttgaagaaatttttggagGAAGACCTTAGTACGTATAATTCACT
CACCTTAAAGTTAGAACTTTTCACGTTTACTAACATTAACACAGAGGCCC
AAAATTACATTCGGCCTTGCCGTATTTCCTCCAATAAATGCCGCCCTATC
TCAATTCGCAAAAAGAGTGCTTTACAgtacaataaaaatttgattactgc
agtgacgtagaaaaaaatcatgttgTGAAAATAATTCAATGAAATGGGCT
AATTATAGTATATGATGGCTCCTAGAATGGAGGTGGCCCCTAGAACGGAG Run BLAST on NCBI protein sequence of TCONS_00042864-protein >TCONS_00042864-protein ID=TCONS_00042864-protein|Name=TCONS_00042864-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
TDLLASDFFYYAGKFVAMAFFHGEIGIWSISPCIQEYILSGSKTAAIALV
EAKDVADSETQSILESIKKACTEEDFADLNGEDGISSLLNAAGFVNKMLG
TKTKDQAYQEILFYEVITKRREELDDFRRGMNEDFQLVNFVYKNRSLQSK
LFPKLKDFCFSKEQIINCLSTPPNLTEKQITAFNYLKKFLEEDLSTYNSL
TLKLELFTFTNINTEAQNYIRPCRISSNKCRPISIRKKSALQYNKNLITA
VT Run BLAST on NCBI transcript from alignment at sc0003740:1..1837+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042864 ID=TCONS_00042864|Name=TCONS_00042864|organism=Clytia hemisphaerica|type=transcript|length=1837bp|location=Sequence derived from alignment at sc0003740:1..1837+ (Clytia hemisphaerica)
CACTGATCTGTTGGCTTCAGATTTCTTTTATTATGCTGGGAAATTTGTGG
CAATGGCTTTCTTCCATGGGGAAATTGGAATATGGAGTATTTCGCCTTGC
ATTCAAGAATACATCTTGTCTGGATCCAAAACAGCAGCAATTGCACTTGT
AGAAGCGAAAGATGTGGCTGACTCGGAAACCCAATCTATTTTGGAAAGTG
TAAGTTCCAGTGatagttttcctttttttatttttgggttcTCCTTGGAC
TGTACAATTCAATATTACTTTTTTAATACATAGCTGCATCCCCTAGCTTT
TAAGGGTTCGGGATTTCTAAATTTTGGAACTAAGAGGCCGTTTATATGGA
TCGATCTCGGAGCGGTTAGACTAGAGTCttcttttggctgaactttgctt
tttgatgattttgatgacgctgagttcaGTAATGTAGACTAGGAGCAATT
GGCATTTCTAACgcaaagaaaatttaaagtgcACCGCTATCGATTCCAAT
TTCCATACCAAGCGATTTTCTCAATTGCGGTGCAGGAActtcaagatttt
attttttcctgtgaaaGGCCTGGATCGATTGATGGATTTTGCCAACAAGC
CGAACAAGCTAGAGCAAAAAGCTGTCAATATACACTGGGCCAATTAATCg
cgtcatccagtctatcaaaaagccttAAGTGACCTACGGGCTACGGAGCC
GTTTGAGTTTGGCTTTTCGGAATCCAATCTCGGTTCGGTGCAAATGACCG
TGATCAGTACAGCCTCAGAGGGAAACCCGAAACGCAGTTTCGCGTATGAG
ATTGCTAAAATGAACTCAGTACGCTCCCGAACCGAGATGCATGTAAACAG
GCTCAGAAAAGATTTATCGAGATGAGCATTTAGAGCTGTTTAGAGGCAAT
AGGCATTGAGAGTTTTTTATTTGATAGGGAGGTTACTGATTTATTTTTGT
GCATTTGTTTTCGAAATTAGTATGTCCTATCAATACACGAGTTTTGTCCA
AGCATTGCAACTGTCATGGCGGTGCGAAGACCTCTTATTTTGAAGAATAA
TCATTATTGGTATCTCttaattttgatgcttttaaccCAAAACTTTAGGA
TCCTTAAGTTGAAATCCTGAATCCTAAAGTTCAGTCTTACCAATAATGTA
GcaagaatttaatttaatcacttcaatttttttcagataaaGAAAGCTTG
CACGGAAGAAGACTTTGCTGATCTTAATGGGGAAGATGGTATTTCATCAC
TGCTAAATGCTGCTggttttgtcaataaaatgttGGGTACAAAAACCAAG
GATCAAGCGTACCAGGAAATTTTGTTCTATGAGGTGATAACCAAAAGACG
CGAAGAACTAGACGATTTCAGGAGAGGAATGAACGAAGACTTTCAACTTG
TTAATTTCGTCTACAAAAACAGATCTCTCCAGTCAAAGCTTTTTCCGAAA
CtcaaagatttttgtttttctaaggAACAAATCATAAATTGTTTGTCTAC
ACCCCCTAACTTGACGGAGAAACAAATTACTGCATTTAActatttgaaga
aatttttggagGAAGACCTTAGTACGTATAATTCACTCACCTTAAAGTTA
GAACTTTTCACGTTTACTAACATTAACACAGAGGCCCAAAATTACATTCG
GCCTTGCCGTATTTCCTCCAATAAATGCCGCCCTATCTCAATTCGCAAAA
AGAGTGCTTTACAgtacaataaaaatttgattactgcagtgacgtagaaa
aaaatcatgttgTGAAAATAATTCAATGAAATGGGCTAATTATAGTATAT
GATGGCTCCTAGAATGGAGGTGGCCCCTAGAACGGAG Coding sequence (CDS) from alignment at sc0003740:1..1837+ >TCONS_00042864 ID=TCONS_00042864|Name=TCONS_00042864|organism=Clytia hemisphaerica|type=CDS|length=1518bp|location=Sequence derived from alignment at sc0003740:1..1837+ (Clytia hemisphaerica)
ACTGATCTGTTGGCTTCAGATTTCTTTTATTATGCTGGGAAATTTGTGGC
AATGGCTTTCTTCCATGGGGAAATTGGAATATGGAGTATTTCGCCTTGCA
TTCAAGAATACATCTTGTCTGGATCCAAAACAGCAGCAATTGCACTTGTA
GAAGCGAAAGATGTGGCTGACTCGGAAACCCAATCTATTTTGGAAAGTat
aaaGAAAGCTTGCACGGAAGAAGACTTTGCTGATCTTAATGGGGAAGATG
GTATTTCATCACTGCTAAATGCTGCTggttttgtcaataaaatgttGGGT
ACAAAAACCAAGGATCAAGCGTACCAGGAAATTTTGTTCTATGAGGTGAT
AACCAAAAGACGCGAAGAACTAGACGATTTCAGGAGAGGAATGAACGAAG
ACTTTCAACTTGTTAATTTCGTCTACAAAAACAGATCTCTCCAGTCAAAG
CTTTTTCCGAAACtcaaagatttttgtttttctaaggAACAAATCATAAA
TTGTTTGTCTACACCCCCTAACTTGACGGAGAAACAAATTACTGCATTTA
ActatttgaagaaatttttggagGAAGACCTTAGTACGTATAATTCACTC
ACCTTAAAGTTAGAACTTTTCACGTTTACTAACATTAACACAGAGGCCCA
AAATTACATTCGGCCTTGCCGTATTTCCTCCAATAAATGCCGCCCTATCT
CAATTCGCAAAAAGAGTGCTTTACAgtacaataaaaatttgattactgca
gtgacgtagACTGATCTGTTGGCTTCAGATTTCTTTTATTATGCTGGGAA
ATTTGTGGCAATGGCTTTCTTCCATGGGGAAATTGGAATATGGAGTATTT
CGCCTTGCATTCAAGAATACATCTTGTCTGGATCCAAAACAGCAGCAATT
GCACTTGTAGAAGCGAAAGATGTGGCTGACTCGGAAACCCAATCTATTTT
GGAAAGTataaaGAAAGCTTGCACGGAAGAAGACTTTGCTGATCTTAATG
GGGAAGATGGTATTTCATCACTGCTAAATGCTGCTggttttgtcaataaa
atgttGGGTACAAAAACCAAGGATCAAGCGTACCAGGAAATTTTGTTCTA
TGAGGTGATAACCAAAAGACGCGAAGAACTAGACGATTTCAGGAGAGGAA
TGAACGAAGACTTTCAACTTGTTAATTTCGTCTACAAAAACAGATCTCTC
CAGTCAAAGCTTTTTCCGAAACtcaaagatttttgtttttctaaggAACA
AATCATAAATTGTTTGTCTACACCCCCTAACTTGACGGAGAAACAAATTA
CTGCATTTAActatttgaagaaatttttggagGAAGACCTTAGTACGTAT
AATTCACTCACCTTAAAGTTAGAACTTTTCACGTTTACTAACATTAACAC
AGAGGCCCAAAATTACATTCGGCCTTGCCGTATTTCCTCCAATAAATGCC
GCCCTATCTCAATTCGCAAAAAGAGTGCTTTACAgtacaataaaaatttg
attactgcagtgacgtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042864-exon-sc0003740-1491911889:1..199 | TCONS_00042864-exon-sc0003740-1491911889:1..199 | Clytia hemisphaerica | exon |
| TCONS_00042864-exon-sc0003740-1510915933:1..199 | TCONS_00042864-exon-sc0003740-1510915933:1..199 | Clytia hemisphaerica | exon |
| TCONS_00042864-exon-sc0003740-1575043694:1..199 | TCONS_00042864-exon-sc0003740-1575043694:1..199 | Clytia hemisphaerica | exon |
| TCONS_00042864-exon-sc0003740-1491911889:1187..1837 | TCONS_00042864-exon-sc0003740-1491911889:1187..1837 | Clytia hemisphaerica | exon |
| TCONS_00042864-exon-sc0003740-1510915933:1187..1837 | TCONS_00042864-exon-sc0003740-1510915933:1187..1837 | Clytia hemisphaerica | exon |
| TCONS_00042864-exon-sc0003740-1575043694:1187..1837 | TCONS_00042864-exon-sc0003740-1575043694:1187..1837 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003740 | supercontig | sc0003740:1..1837 + |
Blast
The following BLAST results are available for this feature:
|
