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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042857 ID=TCONS_00042857|Name=TCONS_00042857|organism=Clytia hemisphaerica|type=transcript|length=1215bp
TGATCGTTTATGGAACGCCCGCGGAAGAAGGGGGCGGTGGAAAGTGTTTG
ATGATCGAGAAAGGCGTTTTTAATGAAGTAGACATTTGCATGATGACCCA
CCCATCGCCTTACGAATTACCAAGCCCCTCTTCACTTGGTGTCGCCCAAT
ACAAAATCGTTTTCAAAGGCAAAACAGCACACGCAGCAGCGGCGCCATGG
GAAGGAATCAACGCATTAGATGCCGCTGTAGCATGTTATAATAACGTTAG
CATGTTACGACAACAAATGAAACCAACTAATCGTATTCATTGCACTATTG
TGGATGGAGGAGAAAGACCCAATATCATCCCTGAACGCGCGGAATTGTTC
TATTTCGTTCGCGCGCAAACTGATAAAGAAGTTACAGGTTTAGTCGAACG
ACTCAGAGCGTGTGCTGAAGGAGCAGCCCAGGCTACAGGCTGTACAATGG
ACATGAAGCAAAGTGCGCCCTCTTGGTCTGCTGTCAACACAAATCAAGTC
ATGATCGATCTTTACATCGAAAATGCAAAATCGCTTGGCGTTCCTTTTGA
AGACGACCATATGAGAGAAACATTCCAAGCGGCAACAGATATGGGAAACG
TTTCAGTTGTAAAACCGTCCATTCATCCTTATTACAAAATACAAACAGAA
GAGATAAACCACAACCATGGATTTACAAAAGCCGCTGGATCTGCAGAAAG
TCAGTTACCAACATTGAATACTGCAAAGAGTATGGCAATGACCGTTATTG
ATATCGTTTGTGAGGAAGGACTTTTACAAAAGGTTCAGAAAGGTTTTAAA
GAATCTTTACTTTCGTGATGGAATATAACGAACATGTGATTGCTAAGCTT
CCAAAAACACAGATATTCAGTtgtctctctctaattcaatcttcaaggga
caaacaaagaaagaattttctcaattagggaaagattcgaattacagaga
gtatttaATACGATTTTTCAGTTGAGGGGGCTAATAGTTTAGttcgaatt
actttttcaaatgaGAGAGAGTTTACTGTTCACTGTATCTATTTGTCATG
TTTTTGTCCACTTGTAATAGTAAACTTGTAAATTTTTAACTTGCATTTTT
TCACACATCCAATTTCATACACCACTCACGGgtaatttatgaattttcta
tcatataaaaagcgacaaaagtaatatttttgcaacgttttttaataaaa
taaatcttttaattt Run BLAST on NCBI transcript from alignment at sc0003737:5152..7027+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042857 ID=TCONS_00042857|Name=TCONS_00042857|organism=Clytia hemisphaerica|type=transcript|length=1876bp|location=Sequence derived from alignment at sc0003737:5152..7027+ (Clytia hemisphaerica)
TGATCGTTTATGGAACGCCCGCGGAAGAAGGGGGCGGTGGAAAGTGTTTG
ATGATCGAGAAAGGCGTTTTTAATGAAGTAGACATTTGCATGATGACCCA
CCCATCGCCTTACGAATTACCAAGCCCCTCTTCACTTGGTGTCGCCCAAT
ACAAAATCGTTTTCAAAGGTAAGGTTCTGTTGAATGAAAACATGGATAAA
AGAAGATTTACAGATACAATTTTATTACGGATCATCTGATAATGACTCAT
GAAAATTCTTGTATTGATCATGATCTTTAAATTTTATTTGGAAGCCGAAT
TATAATGAAAATGCAAAAAAACTTGGTGTTGGTTTTGAAGATGACCATAT
GAGAGAAACATATGGCCGAAGCACTCATTTGTGGGAAAATTGAATTCACA
AGGGATTGAAAGTCTCTCGAACGCAAGATTATACGTTATAACCTTTCTCA
TTTCACATTTTCTCTCTCCTCAGGCAAAACAGCACACGCAGCAGCGGCGC
CATGGGAAGGAATCAACGCATTAGATGCCGCTGTAGCATGTTATAATAAC
GTTAGCATGTTACGACAACAAATGAAACCAACTAATCGTATTCATTGCAC
TATTGTGGATGGAGGAGAAAGACCCAATATCATCCCTGAACGCGCGGAAT
TGTTCTATTTCGTTCGCGCGCAAACTGATAAAGAAGTTACAGGTTTAGTC
GAACGACTCAGAGCGTGTGCTGAAGGAGCAGCCCAGGCTACAGGTTTGAA
TTTATCTTTTAATCCCCCTGAAAAGTTTTATCGATAGAATTAACCTTTCC
TATTCGTGTTTTTTGATTTCTAATTTCAGTTCAGCTCAATTTTGACAATA
CTTGAGTGTTTGTTTGTCTATCTGTCCGCCTGTCTGGAGCAATGTGAAAG
TAAATAATGATTTTTGGGCAATGACGACgagtttttcaacatttaaaatT
TGGAATAGTGTGGAGATTTTAAATAATGTCagattttttccttaaaaaat
acctaaaattttgaatttgaatgccAAAAAATGGTTTTTAGTTTTAGAAA
TTATAGAAATTATTGTTCAGAGGAAAGTTCTCTCTCTAAATTTTCACAGG
CTGTACAATGGACATGAAGCAAAGTGCGCCCTCTTGGTCTGCTGTCAACA
CAAATCAAGTCATGATCGATCTTTACATCGAAAATGCAAAATCGCTTGGC
GTTCCTTTTGAAGACGACCATATGAGAGAAACATTCCAAGCGGCAACAGA
TATGGGAAACGTTTCAGTTGTAAAACCGTCCATTCATCCTTATTACAAAA
TACAAACAGAAGAGATAAACCACAACCATGGATTTACAAAAGCCGCTGGA
TCTGCAGAAAGTCAGTTACCAACATTGAATACTGCAAAGAGTATGGCAAT
GACCGTTATTGATATCGTTTGTGAGGAAGGACTTTTACAAAAGGTTCAGA
AAGGTTTTAAAGAATCTTTACTTTCGTGATGGAATATAACGAACATGTGA
TTGCTAAGCTTCCAAAAACACAGATATTCAGTtgtctctctctaattcaa
tcttcaagggacaaacaaagaaagaattttctcaattagggaaagattcg
aattacagagagtatttaATACGATTTTTCAGTTGAGGGGGCTAATAGTT
TAGttcgaattactttttcaaatgaGAGAGAGTTTACTGTTCACTGTATC
TATTTGTCATGTTTTTGTCCACTTGTAATAGTAAACTTGTAAATTTTTAA
CTTGCATTTTTTCACACATCCAATTTCATACACCACTCACGGgtaattta
tgaattttctatcatataaaaagcgacaaaagtaatatttttgcaacgtt
ttttaataaaataaatcttttaattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042857-exon-sc0003737-1491911889:5152..5319 | TCONS_00042857-exon-sc0003737-1491911889:5152..5319 | Clytia hemisphaerica | exon |
| TCONS_00042857-exon-sc0003737-1510915933:5152..5319 | TCONS_00042857-exon-sc0003737-1510915933:5152..5319 | Clytia hemisphaerica | exon |
| TCONS_00042857-exon-sc0003737-1575043694:5152..5319 | TCONS_00042857-exon-sc0003737-1575043694:5152..5319 | Clytia hemisphaerica | exon |
| TCONS_00042857-exon-sc0003737-1491911889:5625..5894 | TCONS_00042857-exon-sc0003737-1491911889:5625..5894 | Clytia hemisphaerica | exon |
| TCONS_00042857-exon-sc0003737-1510915933:5625..5894 | TCONS_00042857-exon-sc0003737-1510915933:5625..5894 | Clytia hemisphaerica | exon |
| TCONS_00042857-exon-sc0003737-1575043694:5625..5894 | TCONS_00042857-exon-sc0003737-1575043694:5625..5894 | Clytia hemisphaerica | exon |
| TCONS_00042857-exon-sc0003737-1491911889:6251..7027 | TCONS_00042857-exon-sc0003737-1491911889:6251..7027 | Clytia hemisphaerica | exon |
| TCONS_00042857-exon-sc0003737-1510915933:6251..7027 | TCONS_00042857-exon-sc0003737-1510915933:6251..7027 | Clytia hemisphaerica | exon |
| TCONS_00042857-exon-sc0003737-1575043694:6251..7027 | TCONS_00042857-exon-sc0003737-1575043694:6251..7027 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003737 | supercontig | sc0003737:5152..7027 + |
Blast
BLAST of TCONS_00042857 vs. Swiss-Prot (Human)
Match: P20D2 (Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2) HSP 1 Score: 235.728 bits (600), Expect = 3.677e-72 Identity = 118/267 (44.19%), Postives = 167/267 (62.55%), Query Frame = 3
Query: 12 GTPAEEGGGGKCLMIEKGVFNEVDICMMTHXXXXXXXXXXXXGVAQYKIVFKGKTAHAAAAPWEGINALDAAVACYNNVSMLRQQMKPTNRIHCTIVDGGERPNIIPERAELFYFVRAQTDKEVTGLVERLRACAEGAAQATGCTMDMKQSAPSWSAVNTNQVMIDLYIENAKSLGVPF-EDDHMRETFQAATDMGNVSVVKPSIHPYYKIQTEEINHNHGFTKAAGSAESQLPTLNTAKSMAMTVIDIVCEEGLLQKVQKGFKESL 809
GTPAEE GGGK +IE G F +D+ M HPS + + + GK +H+A+ PWEG+NALDAAV YNN+S+ RQQMKPT R+H I +GG +PNIIP +EL Y+ RA + KE+ L ++ C AA A+GCT+++K A + V N+ + Y+EN + LG+ F +D M +TD GNVS V P IHPY+ I + +NH +T+AAGS E+Q TL TAK++AMT +D++ + LL+ +++ FK L
Sbjct: 160 GTPAEEDGGGKIDLIEAGAFTNLDVVFMAHPSQENAAYLPDMAEHDVTVKYYGKASHSASYPWEGLNALDAAVLAYNNLSVFRQQMKPTWRVHGIIKNGGVKPNIIPSYSELIYYFRAPSMKELQVLTKKAEDCFRAAALASGCTVEIKGGAHDYYNVLPNKSLWKAYMENGRKLGIEFISEDTMLNGPSGSTDFGNVSFVVPGIHPYFHIGSNALNHTEQYTEAAGSQEAQFYTLRTAKALAMTALDVIFKPELLEGIREDFKLKL 426
The following BLAST results are available for this feature:
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