TCONS_00042845 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042845
Unique NameTCONS_00042845
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042845 ID=TCONS_00042845|Name=TCONS_00042845|organism=Clytia hemisphaerica|type=transcript|length=1632bp
AATCAACATGGTATAGAATACACATCAGGATTACTCCCGCgcgcaaaaat
tgaaaaaaaacttttttttctccgGGGTCTTCAATGTTACATTTCCGCAA
AGCGGGCTAATGTAAATGAGCCGGGTGGacaaaatcataacaaaccGAGT
ACTACccatcactttcgctttcgttttcttttCAAGCAAGAAGTCAGGCT
GACCACACGTACGTGTGAGCACTCAAAAAAGCTTANCCGAGTACTACcca
tcactttcgctttcgttttcttttCAAGCAAGAAGTCAGGCTGACCACAC
GTACGTGTGAGCACTCAAAAAAGCTTAATAAAATGGCTACTCCAGAAGGT
GGAAGTacaatttttggtaaaataattCGTCGAGAAATTCCTGCTGATAT
TGTTTATGAAGATGATCAATGTCTGGCATTTAAAGATATCAATCCTCAAG
CTCCAGTACACGTTTTGGTGATTCCAAAAAAACCCATATCTCAACTTTCG
AAAGCTGAAGATTCAGATGAACAACTTCTCGGTCATTTGTTGATAGCTGC
AAAAAGAGTTgctaaagaaatgaaaattgcAGATGATGGTTTTCGTATCG
TTATTAATGATGGACCGAATGGTGGCCAGGAAGTTTATCACCTTCATTTG
CACGTTCTTGGCGGTAAACAGTTGGAAAATTAAGGAATATTTACGCTGtg
aatttgaaataaaacagAGAAATTTATTCAAACAAAATGCTAAATATAAA
TATTGACATGATTAAGCATTAGCACTGTGATTATCTTGATAACAATAATC
AATCTAATGTCTACAAACCAGCCACACACCTTACCTTCGAATGTCTTTAA
TGACTTTAAATACCAGATAATATGTAAAACTAAACTATTTTATATTTATA
TGCATTTTTTCTCCTTATCACAtagttttttatattgaaaacaCTTTCAG
TCGTTGTGagtaattttttaatggcaaATTCCAAGAATGCTATTGACATT
AATTACCATTACGTAGATGAGAGCGGCGCAAAATtttgtaggagagcaga
tttttatgatacggtatttatctttttatattataaatatTAGATAATTG
CTGTGTCATAAAAGTCTGTTTTCTTACACAAACTTCGTGctatcagtgga
ggctaatatgcacagccctcaaatgaaagacttgaCTGgtcattataaaa
atacaaagttaaatcaaaacaaaaatggtagagtagagctgcgagcagag
ctgcgtagttgtattttaatgaccagacagatcattcatttgagggctat
gcatgtttgcctccactgatgcaagttacccaatctcacggtaacactca
aaaacagaaaattttattcatgaaatatttcattttcatttgttttcaaa
tttctctATCATTAGTTACTTAAAAACAAAGGTACACAGTTACtcctaaa
aaagcaaaaaaaaaaaNaaccaaatatggctaattttgattgttcaattg
ttttacaagtttgttttggacacgtgattttaattgttctcgttaatgac
acgtggtttgcgcaatgtttacatttttactacttttatgtccctttaaa
agacTAAATGTGATTGATGGCAAAAGTGTAGG
Run BLAST on NCBI

protein sequence of TCONS_00042845-protein

>TCONS_00042845-protein ID=TCONS_00042845-protein|Name=TCONS_00042845-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MATPEGGSTIFGKIIRREIPADIVYEDDQCLAFKDINPQAPVHVLVIPKK
PISQLSKAEDSDEQLLGHLLIAAKRVAKEMKIADDGFRIVINDGPNGGQE
VYHLHLHVLGGKQLEN
Run BLAST on NCBI

transcript from alignment at sc0003730:6918..8549

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042845 ID=TCONS_00042845|Name=TCONS_00042845|organism=Clytia hemisphaerica|type=transcript|length=1632bp|location=Sequence derived from alignment at sc0003730:6918..8549 (Clytia hemisphaerica)
CCTACACTTTTGCCATCAATCACATTTAgtcttttaaagggacataaaag
tagtaaaaatgtaaacattgcgcaaaccacgtgtcattaacgagaacaat
taaaatcacgtgtccaaaacaaacttgtaaaacaattgaacaatcaaaat
tagccatatttggttNtttttttttttgcttttttaggaGTAACTGTGTA
CCTTTGTTTTTAAGTAACTAATGATagagaaatttgaaaacaaatgaaaa
tgaaatatttcatgaataaaattttctgtttttgagtgttaccgtgagat
tgggtaacttgcatcagtggaggcaaacatgcatagccctcaaatgaatg
atctgtctggtcattaaaatacaactacgcagctctgctcgcagctctac
tctaccatttttgttttgatttaactttgtatttttataatgacCAGtca
agtctttcatttgagggctgtgcatattagcctccactgatagCACGAAG
TTTGTGTAAGAAAACAGACTTTTATGACACAGCAATTATCTAatatttat
aatataaaaagataaataccgtatcataaaaatctgctctcctacaaaAT
TTTGCGCCGCTCTCATCTACGTAATGGTAATTAATGTCAATAGCATTCTT
GGAATttgccattaaaaaattactCACAACGACTGAAAGtgttttcaata
taaaaaactaTGTGATAAGGAGAAAAAATGCATATAAATATAAAATAGTT
TAGTTTTACATATTATCTGGTATTTAAAGTCATTAAAGACATTCGAAGGT
AAGGTGTGTGGCTGGTTTGTAGACATTAGATTGATTATTGTTATCAAGAT
AATCACAGTGCTAATGCTTAATCATGTCAATATTTATATTTAGCATTTTG
TTTGAATAAATTTCTctgttttatttcaaattcaCAGCGTAAATATTCCT
TAATTTTCCAACTGTTTACCGCCAAGAACGTGCAAATGAAGGTGATAAAC
TTCCTGGCCACCATTCGGTCCATCATTAATAACGATACGAAAACCATCAT
CTgcaattttcatttctttagcAACTCTTTTTGCAGCTATCAACAAATGA
CCGAGAAGTTGTTCATCTGAATCTTCAGCTTTCGAAAGTTGAGATATGGG
TTTTTTTGGAATCACCAAAACGTGTACTGGAGCTTGAGGATTGATATCTT
TAAATGCCAGACATTGATCATCTTCATAAACAATATCAGCAGGAATTTCT
CGACGaattattttaccaaaaattgtACTTCCACCTTCTGGAGTAGCCAT
TTTATTAAGCTTTTTTGAGTGCTCACACGTACGTGTGGTCAGCCTGACTT
CTTGCTTGaaaagaaaacgaaagcgaaagtgatggGTAGTACTCGGNTAA
GCTTTTTTGAGTGCTCACACGTACGTGTGGTCAGCCTGACTTCTTGCTTG
aaaagaaaacgaaagcgaaagtgatggGTAGTACTCggtttgttatgatt
ttgtCCACCCGGCTCATTTACATTAGCCCGCTTTGCGGAAATGTAACATT
GAAGACCCcggagaaaaaaaagttttttttcaatttttgcgcGCGGGAGT
AATCCTGATGTGTATTCTATACCATGTTGATT

Coding sequence (CDS) from alignment at sc0003730:6918..8549

>TCONS_00042845 ID=TCONS_00042845|Name=TCONS_00042845|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0003730:6918..8549 (Clytia hemisphaerica)
TTAATTTTCCAACTGTTTACCGCCAAGAACGTGCAAATGAAGGTGATAAA
CTTCCTGGCCACCATTCGGTCCATCATTAATAACGATACGAAAACCATCA
TCTgcaattttcatttctttagcAACTCTTTTTGCAGCTATCAACAAATG
ACCGAGAAGTTGTTCATCTGAATCTTCAGCTTTCGAAAGTTGAGATATGG
GTTTTTTTGGAATCACCAAAACGTGTACTGGAGCTTGAGGATTGATATCT
TTAAATGCCAGACATTGATCATCTTCATAAACAATATCAGCAGGAATTTC
TCGACGaattattttaccaaaaattgtACTTCCACCTTCTGGAGTAGCCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026637XLOC_026637Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042845-proteinTCONS_00042845-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042845-exon-sc0003730-1491911889:6918..8549TCONS_00042845-exon-sc0003730-1491911889:6918..8549Clytia hemisphaericaexon
TCONS_00042845-exon-sc0003730-1510915933:6918..8549TCONS_00042845-exon-sc0003730-1510915933:6918..8549Clytia hemisphaericaexon
TCONS_00042845-exon-sc0003730-1575043694:6918..8549TCONS_00042845-exon-sc0003730-1575043694:6918..8549Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003730supercontigsc0003730:6918..8549 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.6987	21.8811	14.3328	13.4934	32.0615	24.071	21.0635	22.0414	24.9588	20.1142	23.9166	28.1372	20.6331	19.2279	19.9591	19.1595	20.7187	27.1467	15.5218	17.3542	25.6158	25.6395	22.2319	24.5006	25.1343	27.1874	23.2622	24.4587	16.6932	13.5248
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001310Histidine_triad_HIT
IPR011146HIT-like
IPR019808Histidine_triad_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
Blast
[Close]
BLAST of TCONS_00042845 vs. Swiss-Prot (Human)
Match: HINT1 (Histidine triad nucleotide-binding protein 1 OS=Homo sapiens GN=HINT1 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.189e-44
Identity = 73/115 (63.48%), Postives = 95/115 (82.61%), Query Frame = 3 
Query:  330 KMATPEGGSTIFGKIIRREIPADIVYEDDQCLAFKDINPQAPVHVLVIPKKPISQLSKAEDSDEQLLGHLLIAAKRVAKEMKIADDGFRIVINDGPNGGQEVYHLHLHVLGGKQL 674
            ++A P GG TIFGKIIR+EIPA I++EDD+CLAF DI+PQAP H LVIPKK ISQ+S AED DE LLGHL+I  K+ A ++ + + G+R+V+N+G +GGQ VYH+HLHVLGG+Q+
Sbjct:    9 QVARP-GGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGL-NKGYRMVVNEGSDGGQSVYHVHLHVLGGRQM 121
The following BLAST results are available for this feature:
BLAST of TCONS_00042845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HINT13.189e-4463.48Histidine triad nucleotide-binding protein 1 OS=Ho... [more]
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