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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042843 ID=TCONS_00042843|Name=TCONS_00042843|organism=Clytia hemisphaerica|type=transcript|length=1263bp
ATTAGTAAAAAAAATGTCTGGACACAAATGAACAAAGTAACTCATGCATG
TAACATATCTTTAACCAGGACCCTAGTTAACTGGCATAACACATTACAAA
ATCATTAATTTATTGTTTGGTAATACtgagaaacaaacaaaaaacaattt
tcaaatacaCAATACAATAATAGACAAAAATAggcaattcttttgaaaat
agatgacctgatttttaaatttttctgaggATTAATTGACGATTGAAAAT
GATACTTAGATGACAAAGTATAGACAATAAGGGGCAATAAGTCCCTTACG
CTACATTAAAATAGTTAcacaaacaaataattttggtaTCAACAGTCAGA
GCATTTCACAATATTAAGAACTACCTCCAGAATTACctctcaaaattaat
ttcattatgatGACTGACTGATTAATTTAGAATATAGTTTGCTTCTGTTT
GCTTTctataatttgttaaaattacCTAGCCAAAGAATTCATCTATATAA
ATTTTATCTACTGTAAGCAATAGCTTTTTCATTTGCCAGAAACCAGTCTC
GCCAAATTAAAAATCTGGCACACTGTTTTAAAAGTAATATCCAAGCTTTC
AATACTCTTTCCTTTTTTAGCCAATTGAATGTACgttatttttgtaaatc
tcAGATTCTGTCCATGAGATGGCAGATGACGCTTATTTAGTCAATGACCC
AGGCATAATCAATTGTATATTTTAGTCTACTTTCTACAAATGACTACATC
ACAATTTTACGGTTGGGGTaccaaatattttcatatatataCTGATGCAA
TAACCTTCACAATTTCAGTTTGTAGCCTGCTGTGAGCTCTGTCTCTAGTG
ACAGTGTGAACAATGCATTAtccaaattttaagatattcatTCCAAATAT
TGTTAGTAGCAATCTTTGTCAATCTTTTCATCATCGCTGTTGATAATTCT
AATCTACCAAGTCTACCAGCCAAGCCACATATATCAAGATATCCAAAGAA
TCCATCCAGTGACAAATTGTTGCGGTGTTAtaataaaatagccagaaaat
taaagttatgattcaaaaaacatcatttgtcattgcgacaaaatattttt
cagcattggGTGTTAGATgtatatatttcaattctaatCACAATACATCT
TGTCTGTTGAAGATATCCTTGATTTGAAGTCGCCCATCTGTTTTTGAAAT
GCTTTTTCAAGGAGCAGGATATATACAGAATTTATGGttgattattttga
tgttttttcatat Run BLAST on NCBI transcript from alignment at sc0003728:237..1602- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042843 ID=TCONS_00042843|Name=TCONS_00042843|organism=Clytia hemisphaerica|type=transcript|length=1366bp|location=Sequence derived from alignment at sc0003728:237..1602- (Clytia hemisphaerica)
ATTAGTAAAAAAAATGTCTGGACACAAATGAACAAAGTAACTCATGCATG
TAACATATCTTTAACCAGGACCCTAGTTAACTGGCATAACACATTACAAA
ATCATTAATTTATTGTTTGGTAATACTGAGAAACAAACAAAAAACAATTT
TCAAATACACAATACAATAATAGACAAAAATAGGCAATTCTTTTGAAAAT
AGATGACCTGATTTTTAAATTTTTCTGAGGATTAATTGACGATTGAAAAT
GATACTTAGATGACAAAGTATAGACAATAAGGGGCAATAAGTCCCTTACG
CTACATTAAAATAGTTACACAAACAAATAATTTTGGTATCAACAGTCAGA
GCATTTCACAATATTAAGAACTACCTCCAGAATTACCTCTCAAAATTAAT
TTCATTATGATGACTGACTGATTAATTTAGAATATAGTTTGCTTCTGTTT
GCTTTCTATAATTTGTTAAAATTACCTAGCCAAAGAATTCATCTATATAA
ATTTTATCTACTGTAAGCAATAGCTTTTTCATTTGCCAGAAACCAGTCTC
GCCAAATTAAAAATCTGGCACACTGTTTTAAAAGTAATATCCAAGCTTTC
AATACTCTTTCCTTTTTTAGCCAATTGAATGTACGTTATTTTTGTAAATC
TCAGATTCTGTCCATGAGATGGCAGATGACGCTTATTTAGTCAATGACCC
AGGCATAATCAATTGTATATTTTAGTCTACTTTCTACAAATGACTACATC
ACAATTTTACGGTTGGGGTACCAAATATTTTCATATATATACTGATGCAA
TAACCTTCACAATTTCAGTTTGTAGCCTGCTGTGAGCTCTGTCTCTAGTG
ACAGTGTGAACAATGCATTATCCAAATTTTAAGATATTCATTCCAAATAT
TGTTAGTAGCAATCTTTGTCAATCTTTTCATCATCGCTGTTGATAATTCT
AATCTACCAAGTCTACCAGCCAAGCCACATATATCAAGATATCCAAAGAA
TCCATCCAGTGACAAATTGTTGCGGTGTTATAATAAAATAGCCAGAAAAT
TAAAGTTATGATTCAAAAAACATCATTTGTCATTGCGACAAAATATTTTT
CAGCATTGGGTGTTAGATGTATATATTTCAATTCTAATCACAATACATCT
TGTCTGTTGAAGATATCCTTGATTTGAAGTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGTTAGATGTATATATTTCAATTCTAATCACAATACA
TCTTGTCTGTTGAAGATATCCTTGATTTGAAGTCGCCCATCTGTTTTTGA
AATGCTTTTTCAAGGAGCAGGATATATACAGAATTTATGGTTGATTATTT
TGATGTTTTTTCATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042843-exon-sc0003728-1575043694:457..1602 | TCONS_00042843-exon-sc0003728-1575043694:457..1602 | Clytia hemisphaerica | exon |
| TCONS_00042843-exon-sc0003728-1575043694:237..353 | TCONS_00042843-exon-sc0003728-1575043694:237..353 | Clytia hemisphaerica | exon |
| TCONS_00042843-exon-sc0003728-1510915933:457..1602 | TCONS_00042843-exon-sc0003728-1510915933:457..1602 | Clytia hemisphaerica | exon |
| TCONS_00042843-exon-sc0003728-1510915933:237..353 | TCONS_00042843-exon-sc0003728-1510915933:237..353 | Clytia hemisphaerica | exon |
| TCONS_00042843-exon-sc0003728-1491911889:457..1602 | TCONS_00042843-exon-sc0003728-1491911889:457..1602 | Clytia hemisphaerica | exon |
| TCONS_00042843-exon-sc0003728-1491911889:237..353 | TCONS_00042843-exon-sc0003728-1491911889:237..353 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003728 | supercontig | sc0003728:237..1602 - |
Blast
The following BLAST results are available for this feature:
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