TCONS_00042824 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042824
Unique NameTCONS_00042824
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042824 ID=TCONS_00042824|Name=TCONS_00042824|organism=Clytia hemisphaerica|type=transcript|length=534bp
AGCTTTTGATCCCAATACACCGTTGACGAGATGGGGTGACAAATGCCATG
GCGTAGAAGTCTACAATGATTTCACATACTATTATTCAGCATCACCCTTG
GATGAAGGTAAGGATGACCCCTGGAAAGGCGGTAACGGCTTCCTACATGA
CAAAGAAGGAACGCCCAACAATTATGTTCATTGGTTTGATACATACCCTT
TGGAGTTCGGTGAATTCCTTGTGGAGACTTCTTTGAGATATGGAAGTTAT
ATGCAAATACTGTCCGCTAACGATGCTATGTATGTCCGAGAAACAGTGGT
TGTCGATCGAAATGCGGGGACGGTTGCTACAAAATCTACTAGAAGTGAAC
CACGTCAGCATTTGACCAGCAAACTGAAGACTGACCACAACCGACAGATG
ACTGAGCTTCGAAGTCTTCGTAAAGATCTCGTCTCTTATGAAGGTGGCGA
AGAAGAAGCTGTGGAGTATAAGCAGAAAAATGATAATTTACATTTCCTTG
GCTCGATGCCTTACGAACAGAAAACCGTATTTGG
Run BLAST on NCBI

protein sequence of TCONS_00042824-protein

>TCONS_00042824-protein ID=TCONS_00042824-protein|Name=TCONS_00042824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
AFDPNTPLTRWGDKCHGVEVYNDFTYYYSASPLDEGKDDPWKGGNGFLHD
KEGTPNNYVHWFDTYPLEFGEFLVETSLRYGSYMQILSANDAMYVRETVV
VDRNAGTVATKSTRSEPRQHLTSKLKTDHNRQMTELRSLRKDLVSYEGGE
EEAVEYKQKNDNLHFLGSMPYEQKTVF
Run BLAST on NCBI

transcript from alignment at sc0003709:7258..10115-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042824 ID=TCONS_00042824|Name=TCONS_00042824|organism=Clytia hemisphaerica|type=transcript|length=2858bp|location=Sequence derived from alignment at sc0003709:7258..10115- (Clytia hemisphaerica)
AGCTTTTGATCCCAATACACCGTTGACGAGATGGGGTGACAAATGCCATG
GCGTAGAAGTCTACAATGATTTCACGTAAGAAACTTGTGCAATGTGTTCC
ACCTGGTTCTGCAAAAAAGTATACTTAAAAAAGGAAAATTGAACTATCAA
AAAACTTTAAGCATAGCCAACTTAAATTTTGGATTAGCTTATTCAGCGTT
CTACGGTAATTCCCGTTGCGAAGGGAGTCTTAGTTTCAGAAATATGAATC
TTCAAGCACACCAAATTGGAGATTAACAAAAGTCGAGAAATTTTCAAAGC
AAAAAAGCTAATTAACTTTTGATTGACAGCTCTCTTTTATGTCATTTTGA
TGAAATTTTCAACTTTAATGGTGAAACGTATGCACCATCCAAGTCAAATT
TCTCGTTAATGAACAGCTGGTTGATTTTAATTCTTTCGGCAATGGAAAGA
AGAAGAATTTTTCTTTCTGCTGCATGTGAAATTAACTTTTATGAACATTT
CTACCTTTAGCAAATTAACGTTAGTTATGACGAGCTAGCTTATTTTGGAA
TAACTTACTTCATTTTCAATGTTGAAAATGTCCCTTGTGTACTTAGCTTA
CTTAACACTTGATATCTCTGGAACTAAAAACCTTCTGAAGTAAATTTTTA
AGCACAGAGAGCTGAGTAGCTATGCTTTCAACTATACTAAAAATTAAAGT
TATTGGTTAAGTCATTTTATCACAGAATTCCTTTTTTTTTAGTATACTTT
TTTTGCGCAGCACACTATTCCATACAGGAGGGTGGACGAACCTTTTTAAG
GTAAAAAATAAAAATTTAGAGAAGTGATAATACCCCCTGGAAATTTGTAA
AAGAAGTCTTGGAAAAATTATTTTNAGGTAAAAAATAAAAATTTAGAGAA
GTGATAATACCCCCTGGAAATTTGTAAAAGAAGTCTTGGAAAAATTATTT
TCATACCTTAAAGTAACGGTGGACGAACAAAAATTAGCCTTTAGTAACCC
CCTGCAAATTTTAGAATATATAACCTTTGACCTACTGGAAAAATGAAAAG
ATAAATGGATAGGTTAGCCCCCCCTGTACAGATATAAAATGGAATGGGCC
ATTTTTCAACTGATTTTCGACTGATTCGAAGAATTAAATCCACGTGATAT
ATTTGATTCGAAAAATAAAACAAGAATGAATTTTGCTTTTTTTTTTGACT
CGCGGAATTAAATTTCCCATTATCTCTTACTTAGATACTATTATTCAGCA
TCACCCTTGGATGAAGGTAAGGATGACCCTNCCACGTGATATATCTGATT
CGAGAAATAAAACAAGAATGACTTGAATTTCCCATTATCTCTTACTTAGA
TATTATTATTCAGCATCTCCCTTGGATGAAGGTAAGGATGACCCCTGGAA
AGGCGGTAACGGCTTCCTACATGACAAAGAAGGAACGCCCAACAATTATG
TTCATTGGTTTGATACATACCCTTTGGAGTTCGGTGAATTCCTTGTGGAG
ACTTCTTTGAGATATGGAAGTTATATGCAAATACTGTCCGCTAACGATGC
TATGTATGTCCGAGAAACAGTGGTTGTCGATCGAAGTAAGTGTTTTATTT
TAGCACACCTAAAGGGAACTAATTTTCGCAAAACTTATTTTCGCAGAATT
AATTTCTTCGTTTTTAATTGTCTACCGCGAAAAAATTACTTCACTTAAGG
TAACCGCTTGTCTGATGATGCTGAAAATTTGACTGCAAGCTTCATCAGTA
CATAAGACTGATGATCAAAAGTTCATGTCAATAGCATTTTCCGATCCATT
AATACAGTAACTTAGGGCTCATTTAGGGACAAAAGACAACTTTTGGGTCG
TTCTGTAAAATCTACGATACTAGAAAGTTGCAAAGAATTGATCCGCTGTC
CCAAAAATAAATGTCACACGGAGTTACCTCACAAAACTTTAGCAGAAAAA
CAAATAAAGTGAAAAAAGGGGTCCTTTTCCTCAGCATTTTCAAAGAATGA
CTACGTCGCCAATGATATGTGCACACTTGCAAAATTTCAATTAATATAGA
TATTCCAAATGTTATCAGAAAGGTTTTTTTTCCAAGATGCTCGAATGCTT
CAGAAATGTTTACGCAAGGTCATAGGACAGCTTGCTCAGGCATCGAAGGA
GGAGGAGGAATTCCAACTAGGAATCTCTGTTNCCAAGATGCTCGAATGCT
TCAGAAATGTTTACGCAAGGTCATAGGACAGCTTGCTCAGGCATCGAAGG
AGGAGGAGGAATTCGAACTAGGAATCTCTGTTTCGTAAAGATTGTAGCTT
AAACCAGTCGCTCATCGCTTCTTCTATTTCTTTAGCACGGGGTCCACTTA
AGTTAAAGCTTTTTGATAGAATGGCTGGTGCGATTAAGTGTCCTGGTAGT
ATATATGGCAATATGCTTTTGCTTAAGATTTTAGTTGTTTTTGGAAGGTA
AAAACAGTACAGTACGAGGCAATGTATTATTTATCTCCAAGTATTTTTAT
TGTTAGTTGGATTTTTAACATTTTCTCTCAAAATGGCGACCTTGCCAAAC
GCTCCTAGTCTACTTCACTGGACTCATTCTTTTATCAAAAAGCAAAGTTC
AGCCAAAAGTAGACTCTGGTCTTCTATTTCTTTAGATGCGGGGACGGTTG
CTACAAAATCTACTAGAAGTGAACCACGTCAGCATTTGACCAGCAAACTG
AAGACTGACCACAACCGACAGATGACTGAGCTTCGAAGTCTTCGTAAAGA
TCTCGTCTCTTATGAAGGTGGCGAAGAAGAAGCTGTGGAGTATAAGCAGA
AAAATGATAATTTACATTTCCTTGGCTCGATGCCTTACGAACAGAAAACC
GTATTTGG

Coding sequence (CDS) from alignment at sc0003709:7258..10115-

>TCONS_00042824 ID=TCONS_00042824|Name=TCONS_00042824|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at sc0003709:7258..10115- (Clytia hemisphaerica)
ATGCGGGGACGGTTGCTACAAAATCTACTAGAAGTGAACCACGTCAGCAT
TTGACCAGCAAACTGAAGACTGACCACAACCGACAGATGACTGAGCTTCG
AAGTCTTCGTAAAGATCTCGTCTCTTATGAAGGTGGCGAAGAAGAAGCTG
TGGAGTATAAGCAGAAAAATGATAATTTACATTTCCTTGGCTCGATGCCT
TACGAACAGAAAACCGTATTTGTAAGGATGACCCCTGGAAAGGCGGTAAC
GGCTTCCTACATGACAAAGAAGGAACGCCCAACAATTATGTTCATTGGTT
TGATACATACCCTTTGGAGTTCGGTGAATTCCTTGTGGAGACTTCTTTGA
GATATGGAAGTTATATGCAAATACTGTCCGCTAACGATGCTATGTATGTC
CGAGAAACAGTGGTTGTCGATCGAAATACTATTATTCAGCATCACCCTTG
GATGAAGGCTTTTGATCCCAATACACCGTTGACGAGATGGGGTGACAAAT
GCCATGGCGTAGAAGTCTACAATGATTTCACATGCGGGGACGGTTGCTAC
AAAATCTACTAGAAGTGAACCACGTCAGCATTTGACCAGCAAACTGAAGA
CTGACCACAACCGACAGATGACTGAGCTTCGAAGTCTTCGTAAAGATCTC
GTCTCTTATGAAGGTGGCGAAGAAGAAGCTGTGGAGTATAAGCAGAAAAA
TGATAATTTACATTTCCTTGGCTCGATGCCTTACGAACAGAAAACCGTAT
TTGTAAGGATGACCCCTGGAAAGGCGGTAACGGCTTCCTACATGACAAAG
AAGGAACGCCCAACAATTATGTTCATTGGTTTGATACATACCCTTTGGAG
TTCGGTGAATTCCTTGTGGAGACTTCTTTGAGATATGGAAGTTATATGCA
AATACTGTCCGCTAACGATGCTATGTATGTCCGAGAAACAGTGGTTGTCG
ATCGAAATACTATTATTCAGCATCACCCTTGGATGAAGGCTTTTGATCCC
AATACACCGTTGACGAGATGGGGTGACAAATGCCATGGCGTAGAAGTCTA
CAATGATTTCACATGCGGGGACGGTTGCTACAAAATCTACTAGAAGTGAA
CCACGTCAGCATTTGACCAGCAAACTGAAGACTGACCACAACCGACAGAT
GACTGAGCTTCGAAGTCTTCGTAAAGATCTCGTCTCTTATGAAGGTGGCG
AAGAAGAAGCTGTGGAGTATAAGCAGAAAAATGATAATTTACATTTCCTT
GGCTCGATGCCTTACGAACAGAAAACCGTATTTGTAAGGATGACCCCTGG
AAAGGCGGTAACGGCTTCCTACATGACAAAGAAGGAACGCCCAACAATTA
TGTTCATTGGTTTGATACATACCCTTTGGAGTTCGGTGAATTCCTTGTGG
AGACTTCTTTGAGATATGGAAGTTATATGCAAATACTGTCCGCTAACGAT
GCTATGTATGTCCGAGAAACAGTGGTTGTCGATCGAAATACTATTATTCA
GCATCACCCTTGGATGAAGGCTTTTGATCCCAATACACCGTTGACGAGAT
GGGGTGACAAATGCCATGGCGTAGAAGTCTACAATGATTTCACATGCGGG
GACGGTTGCTACAAAATCTACTAGAAGTGAACCACGTCAGCATTTGACCA
GCAAACTGAAGACTGACCACAACCGACAGATGACTGAGCTTCGAAGTCTT
CGTAAAGATCTCGTCTCTTATGAAGGTGGCGAAGAAGAAGCTGTGGAGTA
TAAGCAGAAAAATGATAATTTACATTTCCTTGGCTCGATGCCTTACGAAC
AGAAAACCGTATTTGTAAGGATGACCCCTGGAAAGGCGGTAACGGCTTCC
TACATGACAAAGAAGGAACGCCCAACAATTATGTTCATTGGTTTGATACA
TACCCTTTGGAGTTCGGTGAATTCCTTGTGGAGACTTCTTTGAGATATGG
AAGTTATATGCAAATACTGTCCGCTAACGATGCTATGTATGTCCGAGAAA
CAGTGGTTGTCGATCGAAATACTATTATTCAGCATCACCCTTGGATGAAG
GCTTTTGATCCCAATACACCGTTGACGAGATGGGGTGACAAATGCCATGG
CGTAGAAGTCTACAATGATTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026617XLOC_026617Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042824-exon-sc0003709-1575043694:10041..10115TCONS_00042824-exon-sc0003709-1575043694:10041..10115Clytia hemisphaericaexon
TCONS_00042824-exon-sc0003709-1575043694:8850..8881TCONS_00042824-exon-sc0003709-1575043694:8850..8881Clytia hemisphaericaexon
TCONS_00042824-exon-sc0003709-1575043694:8531..8734TCONS_00042824-exon-sc0003709-1575043694:8531..8734Clytia hemisphaericaexon
TCONS_00042824-exon-sc0003709-1575043694:7258..7480TCONS_00042824-exon-sc0003709-1575043694:7258..7480Clytia hemisphaericaexon
TCONS_00042824-exon-sc0003709-1510915933:10041..10115TCONS_00042824-exon-sc0003709-1510915933:10041..10115Clytia hemisphaericaexon
TCONS_00042824-exon-sc0003709-1510915933:8850..8881TCONS_00042824-exon-sc0003709-1510915933:8850..8881Clytia hemisphaericaexon
TCONS_00042824-exon-sc0003709-1510915933:8531..8734TCONS_00042824-exon-sc0003709-1510915933:8531..8734Clytia hemisphaericaexon
TCONS_00042824-exon-sc0003709-1510915933:7258..7480TCONS_00042824-exon-sc0003709-1510915933:7258..7480Clytia hemisphaericaexon
TCONS_00042824-exon-sc0003709-1491911889:10041..10115TCONS_00042824-exon-sc0003709-1491911889:10041..10115Clytia hemisphaericaexon
TCONS_00042824-exon-sc0003709-1491911889:8850..8881TCONS_00042824-exon-sc0003709-1491911889:8850..8881Clytia hemisphaericaexon
TCONS_00042824-exon-sc0003709-1491911889:8531..8734TCONS_00042824-exon-sc0003709-1491911889:8531..8734Clytia hemisphaericaexon
TCONS_00042824-exon-sc0003709-1491911889:7258..7480TCONS_00042824-exon-sc0003709-1491911889:7258..7480Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042824-proteinTCONS_00042824-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003709supercontigsc0003709:7258..10115 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.0087	2.49056	0.675074	2.12	1.01836	2.9566	2.07593	2.12411	0	0.767495	1.90152	0	14.841	7.87583	0.530434	0.397742	0	0.585306	27.2769	44.8042	7.71248e-08	0	1.44088	1.29684	0.241325	0.757982	0	0	0.499985	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042824 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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