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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042799 ID=TCONS_00042799|Name=TCONS_00042799|organism=Clytia hemisphaerica|type=transcript|length=602bp
GGAAAAACAAGAAACAGCTGGCTGGTTTACGAGCAGAATGTGACCCTGAC
TTATACATGGAAGTTATCGAAGCTCTTCCCTTGGCGAATACTCCTGACGT
TTTTGGTTTACATCCAAATGCTGAAATTGGATACAGCACAACAGCTGCCA
AAGACATGTGGACACAACTCGTTGAATTACAACCGCAAACAGGTGGAGAC
AGTGGTGGTAAAAGTCGTGAAGAATTTATTGGTAAGATTGCTGCAGACAT
CCAAGAGAAGTTACCAACACTTTATGACGTGAATGGTTTCAGAAagaaat
taggattagagatatcaCCAACGACTGTGGTCTTATTACAAGAGTTAGAT
GTGTTGATCAGGAAAATGGGCACCACCCTGATGAACCTACAAAGGatttt
gtgCACAAAACGTTTTGCAGCCCCTGCcccctgcaaaattttgcagaaag
acctggatgaggtcaaaatgcagggtttgcccgggatttgatggctgtta
gtgacaaaacgttaaaagtcaagactcgtcaaatggctttagatgcttgg
agaagaaaaaacagaatagacagtcctggttttatctattttgtcgcaaa
tt Run BLAST on NCBI transcript from alignment at sc0003684:9748..11700+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042799 ID=TCONS_00042799|Name=TCONS_00042799|organism=Clytia hemisphaerica|type=transcript|length=1953bp|location=Sequence derived from alignment at sc0003684:9748..11700+ (Clytia hemisphaerica)
GGAAAAACAAGAAACAGCTGGCTGGTTTACGAGCAGAATGTGACCCTGAC
TTATACATGGAAGTTATCGAAGCTCTTCCCTTGGCGAATACTCCTGACGT
TTTTGGTTTACATCCAAATGCTGAAATTGGATACAGCACAACAGCTGCCA
AAGGTTTGTTCCTTtcacacaatgttgtttcaatcttaataatttttttc
ccgcCGCTATTAAAAAATGTGCAAAGGTGACAGATTTCTAAATATAGAAT
AGAGCCTGAGTAATCTTTGATAACAATAATTCGTCTCTCTCCAATCGAAA
TTTAAAGAATTGAGTAAATGAAATCGTGAGGTGTTTGGTGGTTGAGAAAT
TGTTTCGAGCTTTACAATTGTTCAATAGCAACTTTGAGTAAGTAATGTCG
AGTAAAAGAGTCAAAAAGTAGGTAATCATGGAAGTTCCGTGGTctgatac
acattttttttatataaacaaACTATATGAGAACACCAGGCCTCGATATT
CAATATATTAAGAACATTTTAAGGCTTTACGCACTCTAAAACGCCAAATA
TCTTAGAAAATTACAGAAAAATACGCCCAAAATGAATGGTGAAAACTTAA
GAAGGGTTGAAATTAAGCTTGAAATTCAAAGTTAAAAAGTTAAGAACGTT
GGAAGGCTTCAAAAAATTTGAATGCTCTTATAAAGAAATGTATATTCACT
ATCTACCCATCCTTTTCTCTTTCCAGACATGTGGACACAACTCGTTGAAT
TACAACCGCAAACAGGTGGAGACAGTGGTGGTAAAAGTCGTGAAGAATTT
ATTGGTAAGATTGCTGCAGACATCCAAGAGAAGTTACCAACACTTTATGA
CGTGAATGGTTTCAGAAagaaattaggattagagatatcaCCAACGACTG
TGGTCTTATTACAAGAGTTAGATGTGTTGATCAGGAAAATGGGCACCACC
CTGATGAACCTACAAAGGGTAAGTGTTTTGTTTTAGATTGAAAAAGTCTA
TATTTTACGGCCATGTCGATATCTGTGGGTTGTTCTCTTAGGCCCCGTCA
CTTTAAACCTAACAAAACACTAAAGAATTGAAAATAAGCGTGGTTTgaac
tattcatgatatgcaccattgcgatgtcttctgacattacattacGGAGC
CAcaaaagctgattggttgtgGGTGACTTAGAAttagtcaatacgtcact
tgcaaccaatcagctgttgggtctgttgattgcaatggtgcatatcatga
ataggggTATGTGGGTTGTAGCGCTGACGCAAATNgcaatggtgcatatc
atgaataggggTATGTGGGTTGTAGCGCtgacgcaaattttttttccgtc
agcggaCGTAGACTTGATTTAGCGGCCGTAGACCTGAATTAACGaccgaa
gacctgaattaaacGGTCGAAGACCTGGATCAACGACTTTAGATAGGCAT
GAATACCATTTACTTTATTATCTTTATAATTGTAATGTTTGATCTAAAAT
ATAAGAAGCAAATATAGTACATCCAATACCAggggcggtgcgacacccct
gcaaaacatgcactcgcagggtatgctccggagtcatttttgtcgcagct
tgtttttagcCTACCCGGAGTTGTTTTTCCGGATCATTCGTTAGtgtcat
tagatttattttactgacttaaagtccgcggtaaatataagaaaactgtt
TATCAAGTCGCGCTACAGGAAGCGTGAATTCCAGTCttcattttagattt
tgtgCACAAAACGTTTTGCAGCCCCTGCcccctgcaaaattttgcagaaa
gacctggatgaggtcaaaatgcagggtttgcccgggatttgatggctgtt
agtgacaaaacgttaaaagtcaagactcgtcaaatggctttagatgcttg
gagaagaaaaaacagaatagacagtcctggttttatctattttgtcgcaa
att
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042799-exon-sc0003684-1491911889:9748..9900 | TCONS_00042799-exon-sc0003684-1491911889:9748..9900 | Clytia hemisphaerica | exon |
| TCONS_00042799-exon-sc0003684-1510915933:9748..9900 | TCONS_00042799-exon-sc0003684-1510915933:9748..9900 | Clytia hemisphaerica | exon |
| TCONS_00042799-exon-sc0003684-1575043694:9748..9900 | TCONS_00042799-exon-sc0003684-1575043694:9748..9900 | Clytia hemisphaerica | exon |
| TCONS_00042799-exon-sc0003684-1491911889:10474..10715 | TCONS_00042799-exon-sc0003684-1491911889:10474..10715 | Clytia hemisphaerica | exon |
| TCONS_00042799-exon-sc0003684-1510915933:10474..10715 | TCONS_00042799-exon-sc0003684-1510915933:10474..10715 | Clytia hemisphaerica | exon |
| TCONS_00042799-exon-sc0003684-1575043694:10474..10715 | TCONS_00042799-exon-sc0003684-1575043694:10474..10715 | Clytia hemisphaerica | exon |
| TCONS_00042799-exon-sc0003684-1491911889:11494..11700 | TCONS_00042799-exon-sc0003684-1491911889:11494..11700 | Clytia hemisphaerica | exon |
| TCONS_00042799-exon-sc0003684-1510915933:11494..11700 | TCONS_00042799-exon-sc0003684-1510915933:11494..11700 | Clytia hemisphaerica | exon |
| TCONS_00042799-exon-sc0003684-1575043694:11494..11700 | TCONS_00042799-exon-sc0003684-1575043694:11494..11700 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003684 | supercontig | sc0003684:9748..11700 + |
Blast
BLAST of TCONS_00042799 vs. Swiss-Prot (Human)
Match: DYH10 (Dynein heavy chain 10, axonemal OS=Homo sapiens GN=DNAH10 PE=1 SV=4) HSP 1 Score: 146.747 bits (369), Expect = 1.612e-39 Identity = 69/120 (57.50%), Postives = 93/120 (77.50%), Query Frame = 3
Query: 54 YMEVIEALPLANTPDVFGLHPNAEIGYSTTAAKDMWTQLVELQPQTGGDSGGKSREEFIGKIAADIQEKLPTLYDVNGFRKKLGLEISPTTVVLLQELDV---LIRKMGTTLMNLQRILC 404
++E IEALPLANTP+VFGLHPNAEIGY T AA+DMW L+ELQPQTG S G SR+++IG++A +I+ K+P ++D++ RK+LG +SPT+VVLLQEL+ L+ +M +L LQR L
Sbjct: 4142 FVEAIEALPLANTPEVFGLHPNAEIGYYTQAARDMWAHLLELQPQTGESSSGISRDDYIGQVAKEIENKMPKVFDLDQVRKRLGTGLSPTSVVLLQELERFNKLVVRMTKSLAELQRALA 4261
The following BLAST results are available for this feature:
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