TCONS_00042785 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042785
Unique NameTCONS_00042785
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length413

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042785 ID=TCONS_00042785|Name=TCONS_00042785|organism=Clytia hemisphaerica|type=transcript|length=413bp
ATAAAAATGGTAGCCAAAGTAGCTACAAAAATGACAGCCAAAGTGCtgct
gaaaagaaaaacaacgaaAGTGTTGGTAAAGAAGAAANCAGCCAAAGTGC
tgctgaaaagaaaaacaacgaaAGTGTTGGTAAAGAAGAAACTTCTCTTG
ACTTATACTCTAATCTCAACCTTGTGAGCACAGAAGAGAAAAAGGGCGAA
AAAATCGATGATGGTTGGGCTAAAATAATAGATAAACAATGGAGTAACTC
CAAAACTGTTGGCAAACTTAAACCACTCATGGAGAAATATGTAGTCCCAA
AAAATTGTCAGAAACTAACCATTTTGGATATGAATGAGGAGATTAACAAA
CTGCTTTAGTCTTTCCAAAAGAAGAATGACAGGAGATATAAAGGCATACA
AAAAGCACTCAGG
Run BLAST on NCBI

protein sequence of TCONS_00042785-protein

>TCONS_00042785-protein ID=TCONS_00042785-protein|Name=TCONS_00042785-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
KNGSQSSYKNDSQSAAEKKNNESVGKEEXSQSAAEKKNNESVGKEETSLD
LYSNLNLVSTEEKKGEKIDDGWAKIIDKQWSNSKTVGKLKPLMEKYVVPK
NCQKLTILDMNEEINKLL
Run BLAST on NCBI

transcript from alignment at sc0003671:6300..6712

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042785 ID=TCONS_00042785|Name=TCONS_00042785|organism=Clytia hemisphaerica|type=transcript|length=413bp|location=Sequence derived from alignment at sc0003671:6300..6712 (Clytia hemisphaerica)
CCTGAGTGCTTTTTGTATGCCTTTATATCTCCTGTCATTCTTCTTTTGGA
AAGACTAAAGCAGTTTGTTAATCTCCTCATTCATATCCAAAATGGTTAGT
TTCTGACAATTTTTTGGGACTACATATTTCTCCATGAGTGGTTTAAGTTT
GCCAACAGTTTTGGAGTTACTCCATTGTTTATCTATTATTTTAGCCCAAC
CATCATCGATTTTTTCGCCCTTTTTCTCTTCTGTGCTCACAAGGTTGAGA
TTAGAGTATAAGTCAAGAGAAGTTTCTTCTTTACCAACACTttcgttgtt
tttcttttcagcaGCACTTTGGCTGNTTTCTTCTTTACCAACACTttcgt
tgtttttcttttcagcaGCACTTTGGCTGTCATTTTTGTAGCTACTTTGG
CTACCATTTTTAT

Coding sequence (CDS) from alignment at sc0003671:6300..6712

>TCONS_00042785 ID=TCONS_00042785|Name=TCONS_00042785|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0003671:6300..6712 (Clytia hemisphaerica)
CTAAAGCAGTTTGTTAATCTCCTCATTCATATCCAAAATGGTTAGTTTCT
GACAATTTTTTGGGACTACATATTTCTCCATGAGTGGTTTAAGTTTGCCA
ACAGTTTTGGAGTTACTCCATTGTTTATCTATTATTTTAGCCCAACCATC
ATCGATTTTTTCGCCCTTTTTCTCTTCTGTGCTCACAAGGTTGAGATTAG
AGTATAAGTCAAGAGAAGTTTCTTCTTTACCAACACTttcgttgtttttc
ttttcagcaGCACTTTGGCTGNTTTCTTCTTTACCAACACTttcgttgtt
tttcttttcagcaGCACTTTGGCTGTCATTTTTGTAGCTACTTTGGCTAC
CATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026584XLOC_026584Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042785-proteinTCONS_00042785-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042785-exon-sc0003671-1491911889:6300..6712TCONS_00042785-exon-sc0003671-1491911889:6300..6712Clytia hemisphaericaexon
TCONS_00042785-exon-sc0003671-1510915933:6300..6712TCONS_00042785-exon-sc0003671-1510915933:6300..6712Clytia hemisphaericaexon
TCONS_00042785-exon-sc0003671-1575043694:6300..6712TCONS_00042785-exon-sc0003671-1575043694:6300..6712Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003671supercontigsc0003671:6300..6712 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.695642	0.607519	0.551146	0.385292	0.445789	0.703103	0.821487	0	1.3567	2.85171	5.51722	2.62726	2.11367	0.516882	0.313797	1.97534	1.95831	1.04513	0.840036	0.580362	0.952984	2.49554	0.877687	1.34328	0.326259	0	1.02323	1.63824	2.05437	3.35695
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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