TCONS_00042769 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042769
Unique NameTCONS_00042769
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length733

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042769 ID=TCONS_00042769|Name=TCONS_00042769|organism=Clytia hemisphaerica|type=transcript|length=733bp
NgaagaggaagaagaagaagaagatgaggAGATCACAAATGATAATGTTT
TGAACAAAAGCCAACAAATGAAAAATGCACCATTCCGCAGAGTCATTTCT
GAAGATGTCTTTGTTCGAAATAGTTTGAGAGACAATAGTTTTGAAGCCAA
AATTGGGGCTACTGGTGATTGGGGTGAAAGAGCTAATAATGACTTAAAAT
TTACAAGAGGAAAAGGTTTCCGACATgaaaaaaccaaaaagaaaCGAGGA
AGTTATAAAGGAGGTGCAATCAATACCTCTGTGAATTCCATAAAGTTTGA
TGACAGTGACTGATTGGTATTGATTATCACTGAATGGGACAGCTTTTAAA
GAtgatttttatacttttttatataGCACAAGATAGAGCTTTAATAACTG
GAACTACTTTATTAAGAATACTCTACAGACTCAGTGAAGGAGAAGCAAAC
TGTATTTTCTCTATTAAAAGTGCTGCCCAAAAAGTAGTGCTTACTAGAAT
CACACATGGTTACTAGCCATAATTTGTCTTTTTGTTAGCCAATTTTATCT
AATTGAGCTCGTTATAATGAAGCTGGAGCTATTGAAACAGTCTAACTCAT
TCTAAAATATACAAGGTTACGTCGAACGTTGTAACAAACTAAACCTATAT
AGTaacatttttggtttttttttgaaCCCAGATGTCTTTgagaatttgaa
ttttgaaaagagCGTTACACCTAAAATTGcgca
Run BLAST on NCBI

protein sequence of TCONS_00042769-protein

>TCONS_00042769-protein ID=TCONS_00042769-protein|Name=TCONS_00042769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
EEEEEEEDEEITNDNVLNKSQQMKNAPFRRVISEDVFVRNSLRDNSFEAK
IGATGDWGERANNDLKFTRGKGFRHEKTKKKRGSYKGGAINTSVNSIKFD
DSD
Run BLAST on NCBI

transcript from alignment at sc0003664:29..761

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042769 ID=TCONS_00042769|Name=TCONS_00042769|organism=Clytia hemisphaerica|type=transcript|length=733bp|location=Sequence derived from alignment at sc0003664:29..761 (Clytia hemisphaerica)
tgcgCAATTTTAGGTGTAACGctcttttcaaaattcaaattctcAAAGAC
ATCTGGGttcaaaaaaaaaccaaaaatgttACTATATAGGTTTAGTTTGT
TACAACGTTCGACGTAACCTTGTATATTTTAGAATGAGTTAGACTGTTTC
AATAGCTCCAGCTTCATTATAACGAGCTCAATTAGATAAAATTGGCTAAC
AAAAAGACAAATTATGGCTAGTAACCATGTGTGATTCTAGTAAGCACTAC
TTTTTGGGCAGCACTTTTAATAGAGAAAATACAGTTTGCTTCTCCTTCAC
TGAGTCTGTAGAGTATTCTTAATAAAGTAGTTCCAGTTATTAAAGCTCTA
TCTTGTGCtatataaaaaagtataaaaatcaTCTTTAAAAGCTGTCCCAT
TCAGTGATAATCAATACCAATCAGTCACTGTCATCAAACTTTATGGAATT
CACAGAGGTATTGATTGCACCTCCTTTATAACTTCCTCGtttctttttgg
ttttttcATGTCGGAAACCTTTTCCTCTTGTAAATTTTAAGTCATTATTA
GCTCTTTCACCCCAATCACCAGTAGCCCCAATTTTGGCTTCAAAACTATT
GTCTCTCAAACTATTTCGAACAAAGACATCTTCAGAAATGACTCTGCGGA
ATGGTGCATTTTTCATTTGTTGGCTTTTGTTCAAAACATTATCATTTGTG
ATCTcctcatcttcttcttcttcttcctcttcN

Coding sequence (CDS) from alignment at sc0003664:29..761

>TCONS_00042769 ID=TCONS_00042769|Name=TCONS_00042769|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0003664:29..761 (Clytia hemisphaerica)
TCAGTCACTGTCATCAAACTTTATGGAATTCACAGAGGTATTGATTGCAC
CTCCTTTATAACTTCCTCGtttctttttggttttttcATGTCGGAAACCT
TTTCCTCTTGTAAATTTTAAGTCATTATTAGCTCTTTCACCCCAATCACC
AGTAGCCCCAATTTTGGCTTCAAAACTATTGTCTCTCAAACTATTTCGAA
CAAAGACATCTTCAGAAATGACTCTGCGGAATGGTGCATTTTTCATTTGT
TGGCTTTTGTTCAAAACATTATCATTTGTGATCTcctcatcttcttcttc
ttcttcctcttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026569XLOC_026569Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042769-proteinTCONS_00042769-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042769-exon-sc0003664-1491911889:29..761TCONS_00042769-exon-sc0003664-1491911889:29..761Clytia hemisphaericaexon
TCONS_00042769-exon-sc0003664-1510915933:29..761TCONS_00042769-exon-sc0003664-1510915933:29..761Clytia hemisphaericaexon
TCONS_00042769-exon-sc0003664-1575043694:29..761TCONS_00042769-exon-sc0003664-1575043694:29..761Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003664supercontigsc0003664:29..761 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.0934	35.8504	19.438	19.2289	36.1826	20.7358	22.6515	25.43	14.4945	13.2678	16.4449	11.7876	16.0879	16.0944	12.116	12.2023	11.0915	8.54275	4.12333	4.65867	15.5393	12.6959	30.0451	24.5902	15.8604	18.8026	9.7854	13.2256	14.8737	15.0558
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007718SRP40_C
Blast
[Close]
BLAST of TCONS_00042769 vs. Swiss-Prot (Human)
Match: NOLC1 (Nucleolar and coiled-body phosphoprotein 1 OS=Homo sapiens GN=NOLC1 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 7.510e-29
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 2 
Query:   74 NAPFRRVISEDVFVRNSLRDNSFEAKIGATGDWGERANNDLKFTRGKGFRHEKTKKKRGSYKGGAINTSVNSIKFDD 304
            ++PFRRV  E++ V + + DNSF+AK GA GDWGERAN  LKFT+GK FRHEKTKKKRGSY+GG+I+  VNSIKFD 
Sbjct:  622 SSPFRRVREEEIEVDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFDS 698
The following BLAST results are available for this feature:
BLAST of TCONS_00042769 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NOLC17.510e-2967.53Nucleolar and coiled-body phosphoprotein 1 OS=Homo... [more]
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