TCONS_00042769-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00042769-protein
Unique NameTCONS_00042769-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length103

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00042769-protein ID=TCONS_00042769-protein|Name=TCONS_00042769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
EEEEEEEDEEITNDNVLNKSQQMKNAPFRRVISEDVFVRNSLRDNSFEAK
IGATGDWGERANNDLKFTRGKGFRHEKTKKKRGSYKGGAINTSVNSIKFD
DSD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_026569XLOC_026569Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00042769TCONS_00042769Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007718SRP40_C
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007718SRP40, C-terminalPFAMPF05022SRP40_Ccoord: 27..99
e-value: 1.6E-30
score: 105.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Blast
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BLAST of TCONS_00042769-protein vs. Swiss-Prot (Human)
Match: NOLC1 (Nucleolar and coiled-body phosphoprotein 1 OS=Homo sapiens GN=NOLC1 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 3.442e-27
Identity = 53/82 (64.63%), Postives = 66/82 (80.49%), Query Frame = 0 
Query:   19 KSQQMKNAPFRRVISEDVFVRNSLRDNSFEAKIGATGDWGERANNDLKFTRGKGFRHEKTKKKRGSYKGGAINTSVNSIKFD 100
            K ++  ++PFRRV  E++ V + + DNSF+AK GA GDWGERAN  LKFT+GK FRHEKTKKKRGSY+GG+I+  VNSIKFD
Sbjct:  616 KGEKRASSPFRRVREEEIEVDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFD 697
The following BLAST results are available for this feature:
BLAST of TCONS_00042769-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NOLC13.442e-2764.63Nucleolar and coiled-body phosphoprotein 1 OS=Homo... [more]
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