TCONS_00042768 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042768
Unique NameTCONS_00042768
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042768 ID=TCONS_00042768|Name=TCONS_00042768|organism=Clytia hemisphaerica|type=transcript|length=412bp
ATAATGAACAAATTGAAGAACAAAGCCGGAaaggattttttatttatttt
agttaTCTAAACTTCATAAATAACAAATGATCCAAAACGCTAAAAATGTT
AAATGACCTAATTGCATTCCAATAATTATAATAGGTGAAAAAATGCTAGT
TGAAAAATAGTTTTACAGACAGAAATTACCgtgaattaaaatgaaaaaag
tgacATAATAAAAAAATCTAGACTGTAGAAGATCACAATTCTTCTTTGGC
TGATGGAGTTGCTTCTGCAAAAACACTCAAGACATTTTTACGCTTGAACA
TGGTGTCTCTTTTGTCAGATGTCATATGGCCTTCTGCAAATGAAATATGT
TTGAACCATTGAGAAATGAAATATCATGATGGGTGGAGAACCAAACAGag
cttaaaaaatca
Run BLAST on NCBI

transcript from alignment at sc0003662:4416..4827

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042768 ID=TCONS_00042768|Name=TCONS_00042768|organism=Clytia hemisphaerica|type=transcript|length=412bp|location=Sequence derived from alignment at sc0003662:4416..4827 (Clytia hemisphaerica)
tgattttttaagctCTGTTTGGTTCTCCACCCATCATGATATTTCATTTC
TCAATGGTTCAAACATATTTCATTTGCAGAAGGCCATATGACATCTGACA
AAAGAGACACCATGTTCAAGCGTAAAAATGTCTTGAGTGTTTTTGCAGAA
GCAACTCCATCAGCCAAAGAAGAATTGTGATCTTCTACAGTCTAGATTTT
TTTATTATgtcacttttttcattttaattcacGGTAATTTCTGTCTGTAA
AACTATTTTTCAACTAGCATTTTTTCACCTATTATAATTATTGGAATGCA
ATTAGGTCATTTAACATTTTTAGCGTTTTGGATCATTTGTTATTTATGAA
GTTTAGAtaactaaaataaataaaaaatccttTCCGGCTTTGTTCTTCAA
TTTGTTCATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026568XLOC_026568Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042768-exon-sc0003662-1491911889:4416..4827TCONS_00042768-exon-sc0003662-1491911889:4416..4827Clytia hemisphaericaexon
TCONS_00042768-exon-sc0003662-1510915933:4416..4827TCONS_00042768-exon-sc0003662-1510915933:4416..4827Clytia hemisphaericaexon
TCONS_00042768-exon-sc0003662-1575043694:4416..4827TCONS_00042768-exon-sc0003662-1575043694:4416..4827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003662supercontigsc0003662:4416..4827 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
399.693	402.034	399.916	395.902	205.28	141.915	269.629	250.951	228.862	193.002	202.737	222.429	126.228	123.726	128.514	144.838	140.643	139.852	79.5144	77.3739	87.8669	83.8212	162.111	141.189	103.577	118.23	118.382	87.211	130.353	113.046
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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