TCONS_00042767 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042767
Unique NameTCONS_00042767
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042767 ID=TCONS_00042767|Name=TCONS_00042767|organism=Clytia hemisphaerica|type=transcript|length=347bp
GGAGAAACAAGACAAAATCTGAAAAGCAATTATGTCAACTGagatcttcc
aataaagcataatggATAATGGATCTACTTTATCAAAACGATTAAAGTTT
AATTTGAATTATCATTATCCATCActggtaaaaatttcaaattagcacTT
TCTGATTATGAGTGAGATGCATACCAGGAAATAAAGTCTGTTACATGGGG
TGAATATATTGTAGCGTGATTTCCCAGTTGACCATtttttaaagggaatt
tcccaagaATCCATATTGCAAGATGAATAATAATTTCAGTCATCTTTTAG
AGTACCTTGCCCCCGATCTTTtggccaaaaatcagaaaaaaacaaag
Run BLAST on NCBI

transcript from alignment at sc0003662:1891..2237

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042767 ID=TCONS_00042767|Name=TCONS_00042767|organism=Clytia hemisphaerica|type=transcript|length=347bp|location=Sequence derived from alignment at sc0003662:1891..2237 (Clytia hemisphaerica)
ctttgtttttttctgatttttggccaAAAGATCGGGGGCAAGGTACTCTA
AAAGATGACTGAAATTATTATTCATCTTGCAATATGGATtcttgggaaat
tccctttaaaaaATGGTCAACTGGGAAATCACGCTACAATATATTCACCC
CATGTAACAGACTTTATTTCCTGGTATGCATCTCACTCATAATCAGAAAg
tgctaatttgaaatttttaccagTGATGGATAATGATAATTCAAATTAAA
CTTTAATCGTTTTGATAAAGTAGATCCATTATccattatgctttattgga
agatctCAGTTGACATAATTGCTTTTCAGATTTTGTCTTGTTTCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026567XLOC_026567Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042767-exon-sc0003662-1491911889:1891..2237TCONS_00042767-exon-sc0003662-1491911889:1891..2237Clytia hemisphaericaexon
TCONS_00042767-exon-sc0003662-1510915933:1891..2237TCONS_00042767-exon-sc0003662-1510915933:1891..2237Clytia hemisphaericaexon
TCONS_00042767-exon-sc0003662-1575043694:1891..2237TCONS_00042767-exon-sc0003662-1575043694:1891..2237Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003662supercontigsc0003662:1891..2237 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.514169	1.25349	1.16434	1.4239	0	0	0.991568	0.618863	0.43328	1.07338	0.520922	1.0273	0.854894	1.06538	0.875886	2.03658	0.771969	0	0.273286	1.1439	1.49138	1.45489	0.294768	0	0	0.246341	0.352514	0	0.856031	0.58144
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042767 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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