TCONS_00042766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042766
Unique NameTCONS_00042766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042766 ID=TCONS_00042766|Name=TCONS_00042766|organism=Clytia hemisphaerica|type=transcript|length=1641bp
TCAGAacaaaaaaatactcaaaaaattgaagtaaaaaaagtaaagaaaac
aaaaaaaaattatagcacAGTTGAAAAATGGATTTCCCGCAAGCAATTGT
TGCAATCGTTATGTTGGCAGTTTGTGTCTTGCTCGGATTGCCAGTCTGGT
GGAACACTACCAAAGTTTATCGGGCATCCCTTCCACAttctaaaattgaa
gaattaaGTCAACTACGATGGAAAGCTGTTGTATCGGTCAATCTTATTGC
GGAAGGCAAGGATATTTGGTATGACACTATCAAATCAGAAGCAGATTTTG
ATAATGAATCGTTTGAATTTACATTTACACAAATTGAAGCTAGGTTAGAG
CGCTCAAATCTGGATTTAGAAAATATGTGTGGACAACTTGATGCTCTGGA
AGGGAAATCCACCCTAGCGGTCAATATGTTGATCTTGAATTCAAAAGACG
AagagttttcttatttttgtcaaTCCGGGTTTTCTTACATAATATCTGCA
ACTAAAGAACAAACAGCAAGTTCTATCTTGTCCGTGTTGAAAGTGATGTT
CCCTATTGGTGATGTGAACTTGTCGGGTGTTAAATCAAAAACCAAAACAT
CTCAATCCTTGCCCTTGTCCACTGGTTATGACATGGTGTTCACTTTAGCT
GTCGGTGAATCTTCTGCTTCTCAATCATTTTGGGATATTGAAGATTCAAT
CAAATCTTTGCTAAATCCATTTTTAAAGAAGTTGGAGTTTCTTGGACCGT
TCCACGTTTCATCTCAGGTTTTGTATCATGCGGATGTTGGCATCGAACCG
AAGTTTTTGTCTGGTGAAAACAATAATACTTTTCATTATTACACCAAACA
AAAGATCTCTTTGATCATGAATCCTTTAGAATCAACACTTAACACCTATA
CTTCAACTGATGCTGGCATCAACTTCATCATCTACGTTCCTCCTCAAAAA
CATTCTCCTCTTTTCATTAAGAATGCAAATTCCGCGAAAAATAAAGCCTT
TCACAGCCCACGTTGGGGAGGATTACAAATACATAATCCCACATCTTATG
ATAGTCTTGATATCGAGACAAGGGAGCacatgaaaatatttatgaATCAA
ATACAACAGTTGAATGGAGTTGATCCTGAGACGTCTACAaaatattttcc
taaaaatcaaCCAAGTCTTGTTGCCGAGCCAATTCTGAATCGTCTTAAAC
TCTCGTTTCTGCTGAAACGTTTGAAGACAAGTATCTTTACATTATCATCA
CTATCCAAACTTCTTGATGAAATTGCCAACATCGTTATTCGTGATGATAT
CAAAGACCTGATTGAAATTGCTGTTGATAGTATTGAGAAGTCTATTAAGA
GTTTACAAACAGGCGACATTGAGGCTGCCTTAAGTTACTCAAAGAAAGCT
TACGAATGCTCAGAGAAAGCTTTCTTCGATTGGTCACTCCTTGCTCTGTT
ATACTTCCCAGACGACCAAAAATAAAAACGATAACAATAAGAAttgaatg
taaacaaaaagaaatgggAAAACATAAAGATAAACCTAAAGATCATGACA
ATGGTATGAACTTTTCCatgaattttaagatttttaaaattcttttattc
GTCCCAAATAATTCTTTACACTACCGCTCAAAAAGGTTTTC
Run BLAST on NCBI

protein sequence of TCONS_00042766-protein

>TCONS_00042766-protein ID=TCONS_00042766-protein|Name=TCONS_00042766-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
MDFPQAIVAIVMLAVCVLLGLPVWWNTTKVYRASLPHSKIEELSQLRWKA
VVSVNLIAEGKDIWYDTIKSEADFDNESFEFTFTQIEARLERSNLDLENM
CGQLDALEGKSTLAVNMLILNSKDEEFSYFCQSGFSYIISATKEQTASSI
LSVLKVMFPIGDVNLSGVKSKTKTSQSLPLSTGYDMVFTLAVGESSASQS
FWDIEDSIKSLLNPFLKKLEFLGPFHVSSQVLYHADVGIEPKFLSGENNN
TFHYYTKQKISLIMNPLESTLNTYTSTDAGINFIIYVPPQKHSPLFIKNA
NSAKNKAFHSPRWGGLQIHNPTSYDSLDIETREHMKIFMNQIQQLNGVDP
ETSTKYFPKNQPSLVAEPILNRLKLSFLLKRLKTSIFTLSSLSKLLDEIA
NIVIRDDIKDLIEIAVDSIEKSIKSLQTGDIEAALSYSKKAYECSEKAFF
DWSLLALLYFPDDQK
Run BLAST on NCBI

transcript from alignment at sc0003662:4975..7150+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042766 ID=TCONS_00042766|Name=TCONS_00042766|organism=Clytia hemisphaerica|type=transcript|length=2176bp|location=Sequence derived from alignment at sc0003662:4975..7150+ (Clytia hemisphaerica)
TCAGAacaaaaaaatactcaaaaaattgaagtaaaaaaagtaaagaaaac
aaaaaaaaattatagcacAGTTGAAAAATGGATTTCCCGCAAGCAATTGT
TGCAATCGTTATGTTGGCAGTTTGTGTCTTGCTCGGATTGCCAGTCTGGT
GGAACACTACCAAAGTTTATCGGGCATCCCTTCCACAttctaaaattgaa
gaattaaGTCAACTACGATGGAAAGCTGTTGTATCGGTCAATCTTATTGC
GGAAGGCAAGGATATTTGGTATGACACTATCAAATCAGAAGCAGATTTTG
ATAATGAATCGTTTGAATTTACATTTACACAAATTGAAGCTAGGTTAGAG
CGCTCAAATCTGGATTTAGAAAATATGTGTGGACAACTTGATGCTCTGGA
AGGGAAATCCACCCTAGCGGTCAATATGTTGATCTTGAATTCAAAAGACG
AagagttttcttatttttgtcaaTCCGGGTTTTCTTACATAATATCTGCA
ACTAAAGAACAAACAGCAAGTTCTATCTTGTCCGTGTTGAAAGTGATGTT
CCCTATTGGTGATGTGAACTTGTCGGGTGTTAAATCAAAAACCAAAACAT
CTCAATCCTTGCCCTTGTCCACTGGTTATGACATGGTGTTCACTTTAGCT
GTCGGTGAATCTTCTGCTTCTCAATCATTTTGGGATATTGAAGATTCAAT
CAAATCTTTGCTAAATCCATTTTTAAAGAAGTTGGAGTTTCTTGGACCGT
TCCACGTTTCATCTCAGGTTTTGTATCATGCGGATGTTGGCATCGAACCG
AAGTTTTTGTCTGGTGAAAACAATAATACTTTTCATTATTACACCAAACA
AAAGATCTCTTTGATCATGAATCCTTTAGAATCAACACTTAACACCTATA
CTTCAACTGATGCTGGCATCAACTTCATCATCTACGTTCCTCCTCAAAAA
CATTCTCCTCTTTTCATTAAGAATGCAAATTCCGCGAAAAATAAAGCCTT
TCACAGCCCACGTTGGGGAGGATTACAAATACATAATCCCACATCTTATG
ATAGTCTTGATATCGAGACAAGGGAGCacatgaaaatatttatgaATCAA
ATACAACAGTTGAATGGAGTTGATCCTGAGACGTCTACAaaatattttcc
taaaaatcaaCCAAGTCTTGTTGCCGAGCCAATTCTGAATCGTCTTAAAC
TCTCGTTTCTGCTGAAACGTTTGAAGACAAGTATCTTTACATTATCATCA
CTATCCAAACTTCTTGATGAAATTGCCAACATCGTTATTCGTGATGATAT
CAAAGACCTGATTGAAATTGCTGTTGATAGTATTGAGAAGTCTATTAAGA
GTTTACAAACAGGCGACATTGAGGCTGCCTTAAGTTACTCAAAGAAAGCT
TACGAATGCTCAGAGAAAGCTTTCTTCGATTGGTCACTCCTTGCTCTGTT
ATACTTCCCAGACGACCAAAAGTATGCAATATATGTTCCACTGTTTTTAC
CTATTTCGTTGccgatatttttatcatttttcaatGCTGTGAAACTCCTC
AGATCCAAGAAATAATTAATTGAAGTAATTAATAGATTGTCCTTAATATT
TCATTCTAGAATTTTGCTAATCtgtttttttgtaaagaataTGACAGGGA
CGTTCTTTATCTAATATGTGATGTATGTGATGTATTATTGAGctttgtta
accggttacttacatttctcagtacagccctcactaaccggtcattattg
tattaataatAGGTACTACATATTGTTTGAATCAGTCGGTCCATTTTTCG
CATAATTTTGtcatttcttacaaaaaaacttAATGGGTAATAGTAATAGT
AATACTACATAGGTAgtagttttgacttttttgatcacTTTTTTATAGAC
AAAGTTGGATAAAGATTGTTAACCCTTTTTCATAGTGCACCTGGCATATT
ATTTGTAGTTTCGTTACCATCAGTATTTTTTATTTACGTTCATACTCTTC
CACTAGATAAAAACGATAACAATAAGAAttgaatgtaaacaaaaagaaat
gggAAAACATAAAGATAAACCTAAAGATCATGACAATGGTATGAACTTTT
CCatgaattttaagatttttaaaattcttttattcGTCCCAAATAATTCT
TTACACTACCGCTCAAAAAGGTTTTC

Coding sequence (CDS) from alignment at sc0003662:4975..7150+

>TCONS_00042766 ID=TCONS_00042766|Name=TCONS_00042766|organism=Clytia hemisphaerica|type=CDS|length=2796bp|location=Sequence derived from alignment at sc0003662:4975..7150+ (Clytia hemisphaerica)
ATGGATTTCCCGCAAGCAATTGTTGCAATCGTTATGTTGGCAGTTTGTGT
CTTGCTCGGATTGCCAGTCTGGTGGAACACTACCAAAGTTTATCGGGCAT
CCCTTCCACAttctaaaattgaagaattaaGTCAACTACGATGGAAAGCT
GTTGTATCGGTCAATCTTATTGCGGAAGGCAAGGATATTTGGTATGACAC
TATCAAATCAGAAGCAGATTTTGATAATGAATCGTTTGAATTTACATTTA
CACAAATTGAAGCTAGGTTAGAGCGCTCAAATCTGGATTTAGAAAATATG
TGTGGACAACTTGATGCTCTGGAAGGGAAATCCACCCTAGCGGTCAATAT
GTTGATCTTGAATTCAAAAGACGAagagttttcttatttttgtcaaTCCG
GGTTTTCTTACATAATATCTGCAACTAAAGAACAAACAGCAAGTTCTATC
TTGTCCGTGTTGAAAGTGATGTTCCCTATTGGTGATGTGAACTTGTCGGG
TGTTAAATCAAAAACCAAAACATCTCAATCCTTGCCCTTGTCCACTGGTT
ATGACATGGTGTTCACTTTAGCTGTCGGTGAATCTTCTGCTTCTCAATCA
TTTTGGGATATTGAAGATTCAATCAAATCTTTGCTAAATCCATTTTTAAA
GAAGTTGGAGTTTCTTGGACCGTTCCACGTTTCATCTCAGGTTTTGTATC
ATGCGGATGTTGGCATCGAACCGAAGTTTTTGTCTGGTGAAAACAATAAT
ACTTTTCATTATTACACCAAACAAAAGATCTCTTTGATCATGAATCCTTT
AGAATCAACACTTAACACCTATACTTCAACTGATGCTGGCATCAACTTCA
TCATCTACGTTCCTCCTCAAAAACATTCTCCTCTTTTCATTAAGAATGCA
AATTCCGCGAAAAATAAAGCCTTTCACAGCCCACGTTGGGGAGGATTACA
AATACATAATCCCACATCTTATGATAGTCTTGATATCGAGACAAGGGAGC
acatgaaaatatttatgaATCAAATACAACAGTTGAATGGAGTTGATCCT
GAGACGTCTACAaaatattttcctaaaaatcaaCCAAGTCTTGTTGCCGA
GCCAATTCTGAATCGTCTTAAACTCTCGTTTCTGCTGAAACGTTTGAAGA
CAAGTATCTTTACATTATCATCACTATCCAAACTTCTTGATGAAATTGCC
AACATCGTTATTCGTGATGATATCAAAGACCTGATTGAAATTGCTGTTGA
TAGTATTGAGAAGTCTATTAAGAGTTTACAAACAGGCGACATTGAGGCTG
CCTTAAGTTACTCAAAGAAAGCTTACGAATGCTCAGAGAAAGCTTTCTTC
GATTGGTCACTCCTTGCTCTGTTATACTTCCCAGACGACCAAAAATAAAT
GGATTTCCCGCAAGCAATTGTTGCAATCGTTATGTTGGCAGTTTGTGTCT
TGCTCGGATTGCCAGTCTGGTGGAACACTACCAAAGTTTATCGGGCATCC
CTTCCACAttctaaaattgaagaattaaGTCAACTACGATGGAAAGCTGT
TGTATCGGTCAATCTTATTGCGGAAGGCAAGGATATTTGGTATGACACTA
TCAAATCAGAAGCAGATTTTGATAATGAATCGTTTGAATTTACATTTACA
CAAATTGAAGCTAGGTTAGAGCGCTCAAATCTGGATTTAGAAAATATGTG
TGGACAACTTGATGCTCTGGAAGGGAAATCCACCCTAGCGGTCAATATGT
TGATCTTGAATTCAAAAGACGAagagttttcttatttttgtcaaTCCGGG
TTTTCTTACATAATATCTGCAACTAAAGAACAAACAGCAAGTTCTATCTT
GTCCGTGTTGAAAGTGATGTTCCCTATTGGTGATGTGAACTTGTCGGGTG
TTAAATCAAAAACCAAAACATCTCAATCCTTGCCCTTGTCCACTGGTTAT
GACATGGTGTTCACTTTAGCTGTCGGTGAATCTTCTGCTTCTCAATCATT
TTGGGATATTGAAGATTCAATCAAATCTTTGCTAAATCCATTTTTAAAGA
AGTTGGAGTTTCTTGGACCGTTCCACGTTTCATCTCAGGTTTTGTATCAT
GCGGATGTTGGCATCGAACCGAAGTTTTTGTCTGGTGAAAACAATAATAC
TTTTCATTATTACACCAAACAAAAGATCTCTTTGATCATGAATCCTTTAG
AATCAACACTTAACACCTATACTTCAACTGATGCTGGCATCAACTTCATC
ATCTACGTTCCTCCTCAAAAACATTCTCCTCTTTTCATTAAGAATGCAAA
TTCCGCGAAAAATAAAGCCTTTCACAGCCCACGTTGGGGAGGATTACAAA
TACATAATCCCACATCTTATGATAGTCTTGATATCGAGACAAGGGAGCac
atgaaaatatttatgaATCAAATACAACAGTTGAATGGAGTTGATCCTGA
GACGTCTACAaaatattttcctaaaaatcaaCCAAGTCTTGTTGCCGAGC
CAATTCTGAATCGTCTTAAACTCTCGTTTCTGCTGAAACGTTTGAAGACA
AGTATCTTTACATTATCATCACTATCCAAACTTCTTGATGAAATTGCCAA
CATCGTTATTCGTGATGATATCAAAGACCTGATTGAAATTGCTGTTGATA
GTATTGAGAAGTCTATTAAGAGTTTACAAACAGGCGACATTGAGGCTGCC
TTAAGTTACTCAAAGAAAGCTTACGAATGCTCAGAGAAAGCTTTCTTCGA
TTGGTCACTCCTTGCTCTGTTATACTTCCCAGACGACCAAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026566XLOC_026566Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042766-proteinTCONS_00042766-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042766-exon-sc0003662-1491911889:4975..6445TCONS_00042766-exon-sc0003662-1491911889:4975..6445Clytia hemisphaericaexon
TCONS_00042766-exon-sc0003662-1510915933:4975..6445TCONS_00042766-exon-sc0003662-1510915933:4975..6445Clytia hemisphaericaexon
TCONS_00042766-exon-sc0003662-1575043694:4975..6445TCONS_00042766-exon-sc0003662-1575043694:4975..6445Clytia hemisphaericaexon
TCONS_00042766-exon-sc0003662-1491911889:6981..7150TCONS_00042766-exon-sc0003662-1491911889:6981..7150Clytia hemisphaericaexon
TCONS_00042766-exon-sc0003662-1510915933:6981..7150TCONS_00042766-exon-sc0003662-1510915933:6981..7150Clytia hemisphaericaexon
TCONS_00042766-exon-sc0003662-1575043694:6981..7150TCONS_00042766-exon-sc0003662-1575043694:6981..7150Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003662supercontigsc0003662:4975..7150 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
50.6869	52.6966	38.4664	27.1274	5.94486	3.70858	3.02771	4.71337	5.8945	4.85085	1.73608	3.21145	2.72445	0.315761	3.38671	7.68792	6.95267e-09	8.67681	2.47288	2.26995	3.12739	4.68359	18.1786	23.5012	0.223461	4.0105	5.24489	0.0434609	14.7942	12.4632
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019540PtdIno-glycan_biosynth_class_S
Vocabulary: Biological Process
TermDefinition
GO:0016255attachment of GPI anchor to protein
Vocabulary: Cellular Component
TermDefinition
GO:0042765GPI-anchor transamidase complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016255 attachment of GPI anchor to protein
cellular_component GO:0042765 GPI-anchor transamidase complex
Blast
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BLAST of TCONS_00042766 vs. Swiss-Prot (Human)
Match: PIGS (GPI transamidase component PIG-S OS=Homo sapiens GN=PIGS PE=1 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 2.439e-55
Identity = 160/515 (31.07%), Postives = 266/515 (51.65%), Query Frame = 3 
Query:  102 AIVMLAVCVLLGLPVWWNTTKVYRASLPHSKIEELSQLRWKAVVSVNLIAEGKDIWYDTIKSEADFDNESFEFTFT-----------QIEARLE---RSNLDLENMC----------GQLDALEGKSTLAVNMLILNSKDEEFSYFCQSGFSYI-------ISATKEQTA-----SSILSVLKVMFPIGDV-------NLSGVKSKTKTSQSLPLSTGYDMVFTLAVGESSASQSFWDIEDSIKSLLNPFLKKLEFLGPFHVSSQVLYHADVGIEPKFLSGENNNTFHYYTKQKISLIMNPLESTL-NTYTSTDAGINFIIYVPPQKHSPLFIKNANSA--KNKAFHSPRWGGLQIHNPTS--YDS------LDIETREHMKIFMNQIQQLNGV-DPETSTKYF---PKNQPSLVAEPIXXXXXXXXXXXXXXTSIFTLSSLSKLLDEIANIVIRDDIKDLIEIAVDSIEKSIKSLQTGDIEAALSYSKKAYECSEKAFFDWSLLALLYFPDDQK 1472
            A+   AV ++LGLP+WW TT+ YRASLP+S+I  L+ L+ + +V V ++   + +  D        D E   FT             +I+ R +   R  LD E               LD  + ++  ++ + +++   E  S   Q   SYI       +     + A       I+ V + M    DV       +L   K   +  + L  S GY++ F+L   +  +   +WDIE +++  + PFL  L   G F V SQ+LY+A +G+ P+F S  ++   +Y     +  ++NP+ES L ++  S    +NF++YVP   HSPL+I++ + A     AFHSPRWGG+ ++N  S  Y++      ++++    M++F+ Q++ L G+  P+   K     P ++  +  E  L+RL  +  ++ L T+  TL+SL++LL +I+NIVI+DD+   +  AV +++KS + L +G + +A   S++A   SE AFFD SLL LLYFPDDQK
Sbjct:   20 ALFFAAVAIVLGLPLWWKTTETYRASLPYSQISGLNALQLRLMVPVTVVFTRESVPLD--------DQEKLPFTVVHEREIPLKYKMKIKCRFQKAYRRALDHEEEALSSGSVQEAEAMLDEPQEQAEGSLTVYVIS---EHSSLLPQDMMSYIGPKRTAVVRGIMHREAFNIIGRRIVQVAQAMSLTEDVLAAALADHLPEDKWSAEKRRPLKSSLGYEITFSLLNPDPKSHDVYWDIEGAVRRYVQPFLNALGAAGNFSVDSQILYYAMLGVNPRFDSASSS---YYLDMHSLPHVINPVESRLGSSAASLYPVLNFLLYVPELAHSPLYIQDKDGAPVATNAFHSPRWGGIMVYNVDSKTYNASVLPVRVEVDMVRVMEVFLAQLRLLFGIAQPQLPPKCLLSGPTSEGLMTWE--LDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYKAVAAVQKSAEELASGHLASAFVASQEAVTSSELAFFDPSLLHLLYFPDDQK 518
The following BLAST results are available for this feature:
BLAST of TCONS_00042766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PIGS2.439e-5531.07GPI transamidase component PIG-S OS=Homo sapiens G... [more]
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