TCONS_00042757 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042757
Unique NameTCONS_00042757
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length999

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042757 ID=TCONS_00042757|Name=TCONS_00042757|organism=Clytia hemisphaerica|type=transcript|length=999bp
ACACTCGGATGATCTCAATATCTTTTAGCATGAAAGTTGTCAATAATCTA
ATACCCTTTCTTAACATATACCTAGGGACATGTTTTAAGCTTGTAATAGC
TGAACTATTGATTGTGGTAACATGATTAGAACAACGGTTATAAAAAAAGT
CAAAATTCCCCTATTCCTCTATTCCCCTAAAGTTACTTTTAGTAGTGAGA
TTGAAAAATTTTGATAGGCCTCTTTTCTGGAAAATCGGAGGAGTATCAGA
ATAAGTTGAAATTCTTGAAGCTGCTTTAGAGTGGGTTGAAGGATAATGGA
ACCGTTAATAAGTAAAGGACAGCAAAGATGGTTGATGCTAGCAAGCTGTT
TAGTGGGAAACTTGCTGACAACCTTTTTTTTTAATTTAGGAAAACTATGT
ATTGAAGTTGTACCAACATCAAAAGTTGCTTTCTTGTCTGAGCATTTGTG
TATTGGTTGTGGTATCTGTGTAAAGAAATGTCCATTTGAGGCTATCACGA
TCATCAATTTACCAAGTAATTTAGAAACGCAAACAACACATAGATATAGC
GCAAATTCATTCAAATTACACAGATTGCCAACACCTCGTCCAGGAGAAGT
TCTTGGTCTTGTTGGAACTAATGGTATTGGAAAATCGACTGCATTGAAAA
TCTTAGCTGGAAAACTCAAACCAAATTTAGGAAGATTTAGTAATGCACCT
GACTGGCAAGAAATCTTAACATATTTTAGGGGCTCAGAATTACAAAATTA
TTTCACTAAAGTTCTTGAAGATGATCTTAAGGTAAGTTTTAAACACAAAA
AATCTTGCATCAATTAACGTTGTTACAAAATGTTTGTATGAAATTTGTCT
GATTTCGATGGTCGAAAAGTTCACAGTAAAACTTTGTAAAGTGGGGACTT
CGTCCTAGAATATCAGTAAGTTATTGGGTACAGAAACAGCAACAAATGTC
TTCTCTCTAACATCAGCTCTCATGCTTCTCTTCTTTCCCATAACTTGCA
Run BLAST on NCBI

protein sequence of TCONS_00042757-protein

>TCONS_00042757-protein ID=TCONS_00042757-protein|Name=TCONS_00042757-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MEPLISKGQQRWLMLASCLVGNLLTTFFFNLGKLCIEVVPTSKVAFLSEH
LCIGCGICVKKCPFEAITIINLPSNLETQTTHRYSANSFKLHRLPTPRPG
EVLGLVGTNGIGKSTALKILAGKLKPNLGRFSNAPDWQEILTYFRGSELQ
NYFTKVLEDDLKVSFKHKKSCIN
Run BLAST on NCBI

transcript from alignment at sc0003653:1351..2783-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042757 ID=TCONS_00042757|Name=TCONS_00042757|organism=Clytia hemisphaerica|type=transcript|length=1433bp|location=Sequence derived from alignment at sc0003653:1351..2783- (Clytia hemisphaerica)
ACACTCGGATGATCTCAATATCTTTTAGCATGAAAGTTGTCAATAATCTA
ATACCCTTTCTTAACATATACCTAGGGACATGTTTTAAGCTTGTAATAGC
TGAACTATTGATTGTGGTAACATGATTAGAACAACGGTTATAAAAAAAGT
CAAAATTCCCCTATTCCTCTATTCCCCTAAAGTTACTTTTAGTAGTGAGA
TTGAAAAATTTTGATAGGCCTCTTTTCTGGAAAATCGGAGGAGTATCAGA
ATAAGTTGAAATTCTTGAAGCTGCTTTAGAGTGGGTTGAAGGATAATGGA
ACCGTTAATAAGTAAAGGACAGCAAAGATGGTTGATGCTAGCAAGCTGTT
TAGTGGGAAACTTGCTGACAACCTTTTTTTTTAATTTAGGAAAACTATGT
ATTGAAGTTGTACCAACATCAAAAGTTGCTTTCTTGTCTGAGCATTTGTG
TATTGGTTGTGGTATCTGTGTAAAGGTTTGTTCTTTTAAAATGTTTCCTT
TTCATCATTTATGCGCATTCTTATTGTTAGTCTTTATTTACATTAGCTTA
ACCTAAGATTAAAATCAACTTTGGCTTTGACTGTGTATTTTTCATCATAT
TTTATTATTCAAAAAGATTATTTTCAAATCCTATCTAAGGAAGTGTACTT
AAGAAAGTAACTTTTCTTCTGCTTTAGAAATGTCCATTTGAGGCTATCAC
GATCATCAATTTACCAAGTAATTTAGAAACGCAAACAACACATAGATATA
GCGCAAATTCATTCAAATTACACAGGTAAAATATGTTTCTCTGCAAATAA
AATGTTAATAATATTCAAAGAGTAAACGTGTTAACTTGTCAATCACGATT
TATCTCCTAGATTGCCAACACCTCGTCCAGGAGAAGTTCTTGGTCTTGTT
GGAACTAATGGTATTGGAAAATCGACTGCATTGAAAATCTTAGCTGGAAA
ACTCAAACCAAATTTAGGAAGATTTAGTGTAAGTTTTTTTTGCTATCGGC
GGGGCATTCATAGCGACAGCTACTTGCTAGTTTTTAGTAGTGTGTGTTAG
AAAAGTCAGACTCAGGATTTCTAAACGTCTACATATACATTTTATATAAC
TTATATATTTTGATTTATATTTTAGAATGCACCTGACTGGCAAGAAATCT
TAACATATTTTAGGGGCTCAGAATTACAAAATTATTTCACTAAAGTTCTT
GAAGATGATCTTAAGGTAAGTTTTAAACACAAAAAATCTTGCATCAATTA
ACGTTGTTACAAAATGTTTGTATGAAATTTGTCTGATTTCGATGGTCGAA
AAGTTCACAGTAAAACTTTGTAAAGTGGGGACTTCGTCCTAGAATATCAG
TAAGTTATTGGGTACAGAAACAGCAACAAATGTCTTCTCTCTAACATCAG
CTCTCATGCTTCTCTTCTTTCCCATAACTTGCA

Coding sequence (CDS) from alignment at sc0003653:1351..2783-

>TCONS_00042757 ID=TCONS_00042757|Name=TCONS_00042757|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at sc0003653:1351..2783- (Clytia hemisphaerica)
AATGCACCTGACTGGCAAGAAATCTTAACATATTTTAGGGGCTCAGAATT
ACAAAATTATTTCACTAAAGTTCTTGAAGATGATCTTAAGGTAAGTTTTA
AACACAAAAAATCTTGCATCAATTAAATTGCCAACACCTCGTCCAGGAGA
AGTTCTTGGTCTTGTTGGAACTAATGGTATTGGAAAATCGACTGCATTGA
AAATCTTAGCTGGAAAACTCAAACCAAATTTAGGAAGATTTAGTAAATGT
CCATTTGAGGCTATCACGATCATCAATTTACCAAGTAATTTAGAAACGCA
AACAACACATAGATATAGCGCAAATTCATTCAAATTACACAGATGGAACC
GTTAATAAGTAAAGGACAGCAAAGATGGTTGATGCTAGCAAGCTGTTTAG
TGGGAAACTTGCTGACAACCTTTTTTTTTAATTTAGGAAAACTATGTATT
GAAGTTGTACCAACATCAAAAGTTGCTTTCTTGTCTGAGCATTTGTGTAT
TGGTTGTGGTATCTGTGTAAAGAATGCACCTGACTGGCAAGAAATCTTAA
CATATTTTAGGGGCTCAGAATTACAAAATTATTTCACTAAAGTTCTTGAA
GATGATCTTAAGGTAAGTTTTAAACACAAAAAATCTTGCATCAATTAAAT
TGCCAACACCTCGTCCAGGAGAAGTTCTTGGTCTTGTTGGAACTAATGGT
ATTGGAAAATCGACTGCATTGAAAATCTTAGCTGGAAAACTCAAACCAAA
TTTAGGAAGATTTAGTAAATGTCCATTTGAGGCTATCACGATCATCAATT
TACCAAGTAATTTAGAAACGCAAACAACACATAGATATAGCGCAAATTCA
TTCAAATTACACAGATGGAACCGTTAATAAGTAAAGGACAGCAAAGATGG
TTGATGCTAGCAAGCTGTTTAGTGGGAAACTTGCTGACAACCTTTTTTTT
TAATTTAGGAAAACTATGTATTGAAGTTGTACCAACATCAAAAGTTGCTT
TCTTGTCTGAGCATTTGTGTATTGGTTGTGGTATCTGTGTAAAGAATGCA
CCTGACTGGCAAGAAATCTTAACATATTTTAGGGGCTCAGAATTACAAAA
TTATTTCACTAAAGTTCTTGAAGATGATCTTAAGGTAAGTTTTAAACACA
AAAAATCTTGCATCAATTAAATTGCCAACACCTCGTCCAGGAGAAGTTCT
TGGTCTTGTTGGAACTAATGGTATTGGAAAATCGACTGCATTGAAAATCT
TAGCTGGAAAACTCAAACCAAATTTAGGAAGATTTAGTAAATGTCCATTT
GAGGCTATCACGATCATCAATTTACCAAGTAATTTAGAAACGCAAACAAC
ACATAGATATAGCGCAAATTCATTCAAATTACACAGATGGAACCGTTAAT
AAGTAAAGGACAGCAAAGATGGTTGATGCTAGCAAGCTGTTTAGTGGGAA
ACTTGCTGACAACCTTTTTTTTTAATTTAGGAAAACTATGTATTGAAGTT
GTACCAACATCAAAAGTTGCTTTCTTGTCTGAGCATTTGTGTATTGGTTG
TGGTATCTGTGTAAAGAATGCACCTGACTGGCAAGAAATCTTAACATATT
TTAGGGGCTCAGAATTACAAAATTATTTCACTAAAGTTCTTGAAGATGAT
CTTAAGGTAAGTTTTAAACACAAAAAATCTTGCATCAATTAAATTGCCAA
CACCTCGTCCAGGAGAAGTTCTTGGTCTTGTTGGAACTAATGGTATTGGA
AAATCGACTGCATTGAAAATCTTAGCTGGAAAACTCAAACCAAATTTAGG
AAGATTTAGTAAATGTCCATTTGAGGCTATCACGATCATCAATTTACCAA
GTAATTTAGAAACGCAAACAACACATAGATATAGCGCAAATTCATTCAAA
TTACACAGATGGAACCGTTAATAAGTAAAGGACAGCAAAGATGGTTGATG
CTAGCAAGCTGTTTAGTGGGAAACTTGCTGACAACCTTTTTTTTTAATTT
AGGAAAACTATGTATTGAAGTTGTACCAACATCAAAAGTTGCTTTCTTGT
CTGAGCATTTGTGTATTGGTTGTGGTATCTGTGTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026558XLOC_026558Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042757-exon-sc0003653-1575043694:2309..2783TCONS_00042757-exon-sc0003653-1575043694:2309..2783Clytia hemisphaericaexon
TCONS_00042757-exon-sc0003653-1575043694:2009..2106TCONS_00042757-exon-sc0003653-1575043694:2009..2106Clytia hemisphaericaexon
TCONS_00042757-exon-sc0003653-1575043694:1806..1923TCONS_00042757-exon-sc0003653-1575043694:1806..1923Clytia hemisphaericaexon
TCONS_00042757-exon-sc0003653-1575043694:1351..1658TCONS_00042757-exon-sc0003653-1575043694:1351..1658Clytia hemisphaericaexon
TCONS_00042757-exon-sc0003653-1510915933:2309..2783TCONS_00042757-exon-sc0003653-1510915933:2309..2783Clytia hemisphaericaexon
TCONS_00042757-exon-sc0003653-1510915933:2009..2106TCONS_00042757-exon-sc0003653-1510915933:2009..2106Clytia hemisphaericaexon
TCONS_00042757-exon-sc0003653-1510915933:1806..1923TCONS_00042757-exon-sc0003653-1510915933:1806..1923Clytia hemisphaericaexon
TCONS_00042757-exon-sc0003653-1510915933:1351..1658TCONS_00042757-exon-sc0003653-1510915933:1351..1658Clytia hemisphaericaexon
TCONS_00042757-exon-sc0003653-1491911889:2309..2783TCONS_00042757-exon-sc0003653-1491911889:2309..2783Clytia hemisphaericaexon
TCONS_00042757-exon-sc0003653-1491911889:2009..2106TCONS_00042757-exon-sc0003653-1491911889:2009..2106Clytia hemisphaericaexon
TCONS_00042757-exon-sc0003653-1491911889:1806..1923TCONS_00042757-exon-sc0003653-1491911889:1806..1923Clytia hemisphaericaexon
TCONS_00042757-exon-sc0003653-1491911889:1351..1658TCONS_00042757-exon-sc0003653-1491911889:1351..1658Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042757-proteinTCONS_00042757-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003653supercontigsc0003653:1351..2783 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
130.951	128.806	67.7767	57.0426	58.9597	50.8886	124.916	125.789	137.232	125.398	159.367	172.411	171.767	167.351	169.537	174.459	138.911	175.965	84.2849	103.351	174.049	172.389	112.651	126.211	137.798	154.944	130.191	148.878	77.3014	80.6047
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013283RLI1
IPR0178964Fe4S_Fe-S-bd
IPR003439ABC_transporter-like
IPR0179004Fe4S_Fe_S_CS
Vocabulary: Molecular Function
TermDefinition
GO:0016887ATPase activity
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016887 ATPase activity
molecular_function GO:0005524 ATP binding
Blast
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BLAST of TCONS_00042757 vs. Swiss-Prot (Human)
Match: ABCE1 (ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 9.242e-74
Identity = 109/136 (80.15%), Postives = 123/136 (90.44%), Query Frame = 2 
Query:  386 LGKLCIEVVPTSKVAFLSEHLCIGCGICVKKCPFEAITIINLPSNLETQTTHRYSANSFKLHRLPTPRPGEVLGLVGTNGIGKSTALKILAGKLKPNLGRFSNAPDWQEILTYFRGSELQNYFTKVLEDDLKVSFK 793
            +GKLCIEV P SK+A++SE LCIGCGIC+KKCPF A++I+NLPSNLE +TTHRY AN+FKLHRLP PRPGEVLGLVGTNGIGKSTALKILAGK KPNLG++ + PDWQEILTYFRGSELQNYFTK+LEDDLK   K
Sbjct:   34 MGKLCIEVTPQSKIAWISETLCIGCGICIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTALKILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIK 169
The following BLAST results are available for this feature:
BLAST of TCONS_00042757 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ABCE19.242e-7480.15ATP-binding cassette sub-family E member 1 OS=Homo... [more]
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