TCONS_00042747 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042747
Unique NameTCONS_00042747
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042747 ID=TCONS_00042747|Name=TCONS_00042747|organism=Clytia hemisphaerica|type=transcript|length=240bp
aaagaaataaaaaaacattatgaAAAACGAAGTTTACCAACCAACAGCCA
CAGATACACTGACTGGCGATGAGGAAGGCACTAATCAGCAAGttCGTTTT
GGTGGCTTTTCCAGTTTACCCTTTCTATGGAAAGCAGTTATCGCTGGACT
TATTTTGTTGAGTTTCATTCTATTGATAGTTGTTATTGTGGTTTCAAGCA
AATCATGTCCTGAATGTAATTGTATGGCTACAACTGCCTC
Run BLAST on NCBI

transcript from alignment at sc0003647:9421..10431+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042747 ID=TCONS_00042747|Name=TCONS_00042747|organism=Clytia hemisphaerica|type=transcript|length=1011bp|location=Sequence derived from alignment at sc0003647:9421..10431+ (Clytia hemisphaerica)
aaagaaataaaaaaacattatgaAAAACGAAGTTTACCAACCAACAGCCA
CAGATACACTGACTGGCGATGAGGAAGGCACTAATCAGCAAGGTAAGATA
ATGATTTTTACTAGCAGACTATTCAATGAAAACTAAACAGTTTTTCTAAG
AATATCAGTTTGGAAGCCGGCTCATTGTTGAAAAGTCCCTTCGAATAAAA
ATAGTTTATTTACAAATGGCAATGTCCCTTTTTATGGGCTGGATAGTAGC
ACATTTTTAGTCTTTGGAATTGAATTTCATAGCAATTGGTTCTATCAAAG
CAAACAGATGACTGTGTAAATTACTaggaaaactttcatttttcttatat
ataAGCATCACttttataggaaacaaataaattaatttatttcttAGTGG
TTGGAATCAGCTTATTGATTTTCAGatatatgtttttgttttaatttctt
tcgCCTACTGTATTACTGCCTGATAgggatcaaaaattgttttattttcg
tattcttaggttccaaataaactcCCCCTCCCCTACTTGTtaattccaac
ccccctcccGGACCTTATTGGGACCCCCCgcttattttaattttaagaat
attttcagctgtcaaagagaaggcctcttattttgctctaaatagcctga
ttttagcctatatttaccttattgttgggttttcagaagtacaatttcca
accctcCCGGCAATTAGGttccccctgtttattaaaatctcgaaaacttt
ccaacccctccccccgttgctgtttatttgaacccccgtttatttggaac
ctaagagtatccAGGAGTATCTGTATTGATAAAATCAAATCgatatcact
ttcaaaatttcagttCGTTTTGGTGGCTTTTCCAGTTTACCCTTTCTATG
GAAAGCAGTTATCGCTGGACTTATTTTGTTGAGTTTCATTCTATTGATAG
TTGTTATTGTGGTTTCAAGCAAATCATGTCCTGAATGTAATTGTATGGCT
ACAACTGCCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026550XLOC_026550Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042747-exon-sc0003647-1491911889:9421..9512TCONS_00042747-exon-sc0003647-1491911889:9421..9512Clytia hemisphaericaexon
TCONS_00042747-exon-sc0003647-1510915933:9421..9512TCONS_00042747-exon-sc0003647-1510915933:9421..9512Clytia hemisphaericaexon
TCONS_00042747-exon-sc0003647-1575043694:9421..9512TCONS_00042747-exon-sc0003647-1575043694:9421..9512Clytia hemisphaericaexon
TCONS_00042747-exon-sc0003647-1491911889:10284..10431TCONS_00042747-exon-sc0003647-1491911889:10284..10431Clytia hemisphaericaexon
TCONS_00042747-exon-sc0003647-1510915933:10284..10431TCONS_00042747-exon-sc0003647-1510915933:10284..10431Clytia hemisphaericaexon
TCONS_00042747-exon-sc0003647-1575043694:10284..10431TCONS_00042747-exon-sc0003647-1575043694:10284..10431Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003647supercontigsc0003647:9421..10431 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.0374	2.52274	5.3774	5.99355	314.388	211.393	135.292	157.457	59.4818	55.8249	35.8682	41.5926	16.5221	22.4269	30.919	23.6947	26.7164	31.0787	11.8255	19.8391	17.109	15.6391	15.8835	11.7345	16.1647	19.174	8.56579	6.603	15.1642	7.98999
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042747 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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