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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042745 ID=TCONS_00042745|Name=TCONS_00042745|organism=Clytia hemisphaerica|type=transcript|length=2772bp
ATCTCTCAAAGacatgattttcaattttttatttctataatTTGTCTGAC
AGCAGTCAGTTGTCAGTCTgaagttttttgtttacattttctgctgctat
gttttgtttttgtttttttgctgacATTGCAACTTCATTTCGATTACTCT
CCCGTGCTCTCCTACGTGGTGTTTTGCTAAACTTGTTTATCTTCGAGTAC
GGCCGGCGTAGTCTTTGACGGCATTATGACGTCACTCCAGCCGTACTAAA
AAGCCCCGTCCCGTCTGCTAAAGTTCTCTAATGATGGTGTTCCTGCAGAG
TTTTTTACCGTCAAGTACTCTTCTTTTGATGAGGCAGTGGGTTTGGTTTG
TATCATGGGGAGGGGTTGTTTCATGGCCAAGGTGGACATCAAGCATGCTT
TTCGTCTTTGCCCTGTCCATCCTGATGATTGGCCTATGTTAGGGTATAAG
TGGTTGGGTAAGTATTTTTTCGACATTCGCCTCCCTTTCGGTCTTCGCTC
CTCTCCTCTTATTTTCAATACTTTCGCTGACGCTCTTACTTGGATTCTTG
TGCATAAGTTTCATATTTCTGCTATCATTCATTATTTGGACGATTTCTTT
GTATGCGCTCCCACAAAACAGGGTTGTCAAGCTAAGGTCAATGCTATCCT
CTCCTTGTTCCGCTTCCTTGGTGTGCCTGTCGCTGACGACAAGCTTGAGG
GCCCCTCTCAATGTCTCGTGTTCTTGGGGATTGAAATTGATTCTGTCTCT
TTTACTTGCAGATTGCCTTCTGATAAGTTGTCCTCTTTACACCAAGATGT
CGAATTGTGGTTATCTCGACGTAAATGTACTAAGCGCGAGTTGTTGTCGT
TTATTGGGTCCCTTTCCTTTGTTTGCAAAGTCATCAAACCTGGTAGAATT
TTTCTGCGTCGCCTCATAGGTCTTTCCACATCAGTTTCTAAGCTTCACCA
TCATATTGACATTTCTGTTTCTGTACGTCGTGACATCTCCATGTGGGCCA
CTCTTTTGTCGTCGTGGAATGGGATCTCTATGTTCCAGTCTCCGAAAATC
TCCTCTCAAGACATTCATCTTTTTACAGATGCTTCTTCTTCCCTGGGAAT
GGGGGCTTTCTTCCATGGAATGTGGTTTTCCGTTGCCTGGCCGGTTGACG
TCTCTGGATTCCACATTGGTGTACTTGAGCTGTTTGCTGTTTATTCTGCT
ATCCTATCCTGGGGCCCAATATTGCGCCATAAACAGATAGTGGTCTTCAC
AGACAATAGCTCGATTATGCAGGTGTGGGAGACAGGTTCTTCGAAAGATG
AACATTTGATGAAACTTGTCAGGCTGATGTTTTTCTTGTCTGTGGATCTA
AATCTCTCTATTACTCTTAGGCATGTTCCTGGTCACTTTAATGTTTTTGC
TGATCTGCTTTCTCGTTTGCAGGTTTCCCGCTTCTTAACACTATGCCCAG
ACGCTTCTCCTCATGGCACCAACGTCCCGTTGACGGCCTGGGAGTTCTTC
AGATAGGACTTGGTATTTGTCTACAACACTCGTTGGCGCCTTCAACTCTT
CAGACGTACGGTTCTGGTTCACGGCAGTATGTCAGCTTTTGTCTCGGCTA
CAGGGTAGCACCCTTTCCTGTCTCGCAATATTTCCTCTGCTTGTTTGTCG
TTTCGTTAGCCCGTCGCAACTTGGCGTACCGTTCGATCAAAGTTTATCTT
TTTGGTATTCAGTACTACAGCATTATCTATGGATATCCTGTCAAGATTTC
TTCCATGAATTATCTTTATTATACCTTACGTGGAATTCGTCGTATTCAAG
GGAACTCCTTACGTCGACCCTCGAGGAATCCTATCACTGTTTCCCACTTA
TGGTCCATGTTCGCTTACGTTGAAGCTTCAAAATTCACACCCTATGATAA
GTCTTTATGGCGCTGCGTTGTTGTACTTGCGTTTTTCGGTCTCTTGCGCG
TTTCAGAGTTTACTTGCGGTTCGACCTTTGACTCTTCCCTACACTTGTCC
CCTTCGGACATTACCTTTAATCGTGAGGGTTCCATCATGTATGTAAGCAT
TAAGGGTAGTAAGACAGACCCCTTCAAATCAGGTTGCGTCGTTCGGTTAG
CCGCTATCCCGGGTCACACGCTCTGTCCCATAGGAGCCATGCGCGAATAT
TTAGCATTCCGTGGTTCTGTTGCTGGTCCCCTCTTTACCCTCAGTAGTGG
TTCCCACCTTTCCCGCAATTACTTAGTCGCCTTTTTGCACCTTACTTTGC
CTTGGGTGTCCAATATCAATACTCATAGTTTTCGCATTGGAGGGGCCTCT
GCTGCATTAGCTGCTGGTGCTTCTGATGCATTGATTAGGGTTATGGGGAG
GTGGTCTAGCGACTGTTACAACAGATACATTAGGATTTCTGACCAACAAG
TTGCACGGTTTCAATTGAATCTTTCCACCGCTAGGGCTACCCATGTTTGG
GATTCCACTAATTGTCCAACTTTTCGTTTTGCATGTTTTTAACTAGAGTT
TATGTATATAGTTTTTACTTAGCGATCATATCCTTATATGCTTTTAATTT
TACTAACGTGAGTGTTTTTGTTTATCTGTATAATAGCTTGTACTGACAAC
TTACAAACAACATGTGtcgttttcttttctcttcGGTTTTGGGTGGATTT
GGGGATGTGGGTTATTATCATAACCCCTTAGCTCTTTCCTAGCTTACTAG
TTCCGGCCCAGTCGCCGAGTTATTCGTTCCGGCCTTAGCCGCCGAGTTAT
TCGTTCCGGCCCTAGCCGCCGN Run BLAST on NCBI protein sequence of TCONS_00042745-protein >TCONS_00042745-protein ID=TCONS_00042745-protein|Name=TCONS_00042745-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
MGRGCFMAKVDIKHAFRLCPVHPDDWPMLGYKWLGKYFFDIRLPFGLRSS
PLIFNTFADALTWILVHKFHISAIIHYLDDFFVCAPTKQGCQAKVNAILS
LFRFLGVPVADDKLEGPSQCLVFLGIEIDSVSFTCRLPSDKLSSLHQDVE
LWLSRRKCTKRELLSFIGSLSFVCKVIKPGRIFLRRLIGLSTSVSKLHHH
IDISVSVRRDISMWATLLSSWNGISMFQSPKISSQDIHLFTDASSSLGMG
AFFHGMWFSVAWPVDVSGFHIGVLELFAVYSAILSWGPILRHKQIVVFTD
NSSIMQVWETGSSKDEHLMKLVRLMFFLSVDLNLSITLRHVPGHFNVFAD
LLSRLQVSRFLTLCPDASPHGTNVPLTAWEFFR Run BLAST on NCBI transcript from alignment at sc0003646:3754..6525 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042745 ID=TCONS_00042745|Name=TCONS_00042745|organism=Clytia hemisphaerica|type=transcript|length=2772bp|location=Sequence derived from alignment at sc0003646:3754..6525 (Clytia hemisphaerica)
NCGGCGGCTAGGGCCGGAACGAATAACTCGGCGGCTAAGGCCGGAACGAA
TAACTCGGCGACTGGGCCGGAACTAGTAAGCTAGGAAAGAGCTAAGGGGT
TATGATAATAACCCACATCCCCAAATCCACCCAAAACCgaagagaaaaga
aaacgaCACATGTTGTTTGTAAGTTGTCAGTACAAGCTATTATACAGATA
AACAAAAACACTCACGTTAGTAAAATTAAAAGCATATAAGGATATGATCG
CTAAGTAAAAACTATATACATAAACTCTAGTTAAAAACATGCAAAACGAA
AAGTTGGACAATTAGTGGAATCCCAAACATGGGTAGCCCTAGCGGTGGAA
AGATTCAATTGAAACCGTGCAACTTGTTGGTCAGAAATCCTAATGTATCT
GTTGTAACAGTCGCTAGACCACCTCCCCATAACCCTAATCAATGCATCAG
AAGCACCAGCAGCTAATGCAGCAGAGGCCCCTCCAATGCGAAAACTATGA
GTATTGATATTGGACACCCAAGGCAAAGTAAGGTGCAAAAAGGCGACTAA
GTAATTGCGGGAAAGGTGGGAACCACTACTGAGGGTAAAGAGGGGACCAG
CAACAGAACCACGGAATGCTAAATATTCGCGCATGGCTCCTATGGGACAG
AGCGTGTGACCCGGGATAGCGGCTAACCGAACGACGCAACCTGATTTGAA
GGGGTCTGTCTTACTACCCTTAATGCTTACATACATGATGGAACCCTCAC
GATTAAAGGTAATGTCCGAAGGGGACAAGTGTAGGGAAGAGTCAAAGGTC
GAACCGCAAGTAAACTCTGAAACGCGCAAGAGACCGAAAAACGCAAGTAC
AACAACGCAGCGCCATAAAGACTTATCATAGGGTGTGAATTTTGAAGCTT
CAACGTAAGCGAACATGGACCATAAGTGGGAAACAGTGATAGGATTCCTC
GAGGGTCGACGTAAGGAGTTCCCTTGAATACGACGAATTCCACGTAAGGT
ATAATAAAGATAATTCATGGAAGAAATCTTGACAGGATATCCATAGATAA
TGCTGTAGTACTGAATACCAAAAAGATAAACTTTGATCGAACGGTACGCC
AAGTTGCGACGGGCTAACGAAACGACAAACAAGCAGAGGAAATATTGCGA
GACAGGAAAGGGTGCTACCCTGTAGCCGAGACAAAAGCTGACATACTGCC
GTGAACCAGAACCGTACGTCTGAAGAGTTGAAGGCGCCAACGAGTGTTGT
AGACAAATACCAAGTCCTATCTGAAGAACTCCCAGGCCGTCAACGGGACG
TTGGTGCCATGAGGAGAAGCGTCTGGGCATAGTGTTAAGAAGCGGGAAAC
CTGCAAACGAGAAAGCAGATCAGCAAAAACATTAAAGTGACCAGGAACAT
GCCTAAGAGTAATAGAGAGATTTAGATCCACAGACAAGAAAAACATCAGC
CTGACAAGTTTCATCAAATGTTCATCTTTCGAAGAACCTGTCTCCCACAC
CTGCATAATCGAGCTATTGTCTGTGAAGACCACTATCTGTTTATGGCGCA
ATATTGGGCCCCAGGATAGGATAGCAGAATAAACAGCAAACAGCTCAAGT
ACACCAATGTGGAATCCAGAGACGTCAACCGGCCAGGCAACGGAAAACCA
CATTCCATGGAAGAAAGCCCCCATTCCCAGGGAAGAAGAAGCATCTGTAA
AAAGATGAATGTCTTGAGAGGAGATTTTCGGAGACTGGAACATAGAGATC
CCATTCCACGACGACAAAAGAGTGGCCCACATGGAGATGTCACGACGTAC
AGAAACAGAAATGTCAATATGATGGTGAAGCTTAGAAACTGATGTGGAAA
GACCTATGAGGCGACGCAGAAAAATTCTACCAGGTTTGATGACTTTGCAA
ACAAAGGAAAGGGACCCAATAAACGACAACAACTCGCGCTTAGTACATTT
ACGTCGAGATAACCACAATTCGACATCTTGGTGTAAAGAGGACAACTTAT
CAGAAGGCAATCTGCAAGTAAAAGAGACAGAATCAATTTCAATCCCCAAG
AACACGAGACATTGAGAGGGGCCCTCAAGCTTGTCGTCAGCGACAGGCAC
ACCAAGGAAGCGGAACAAGGAGAGGATAGCATTGACCTTAGCTTGACAAC
CCTGTTTTGTGGGAGCGCATACAAAGAAATCGTCCAAATAATGAATGATA
GCAGAAATATGAAACTTATGCACAAGAATCCAAGTAAGAGCGTCAGCGAA
AGTATTGAAAATAAGAGGAGAGGAGCGAAGACCGAAAGGGAGGCGAATGT
CGAAAAAATACTTACCCAACCACTTATACCCTAACATAGGCCAATCATCA
GGATGGACAGGGCAAAGACGAAAAGCATGCTTGATGTCCACCTTGGCCAT
GAAACAACCCCTCCCCATGATACAAACCAAACCCACTGCCTCATCAAAAG
AAGAGTACTTGACGGTAAAAAACTCTGCAGGAACACCATCATTAGAGAAC
TTTAGCAGACGGGACGGGGCTTTTTAGTACGGCTGGAGTGACGTCATAAT
GCCGTCAAAGACTACGCCGGCCGTACTCGAAGATAAACAAGTTTAGCAAA
ACACCACGTAGGAGAGCACGGGAGAGTAATCGAAATGAAGTTGCAATgtc
agcaaaaaaacaaaaacaaaacatagcagcagaaaatgtaaacaaaaaac
ttcAGACTGACAACTGACTGCTGTCAGACAAattatagaaataaaaaatt
gaaaatcatgtCTTTGAGAGAT Coding sequence (CDS) from alignment at sc0003646:3754..6525 >TCONS_00042745 ID=TCONS_00042745|Name=TCONS_00042745|organism=Clytia hemisphaerica|type=CDS|length=1152bp|location=Sequence derived from alignment at sc0003646:3754..6525 (Clytia hemisphaerica)
CTATCTGAAGAACTCCCAGGCCGTCAACGGGACGTTGGTGCCATGAGGAG
AAGCGTCTGGGCATAGTGTTAAGAAGCGGGAAACCTGCAAACGAGAAAGC
AGATCAGCAAAAACATTAAAGTGACCAGGAACATGCCTAAGAGTAATAGA
GAGATTTAGATCCACAGACAAGAAAAACATCAGCCTGACAAGTTTCATCA
AATGTTCATCTTTCGAAGAACCTGTCTCCCACACCTGCATAATCGAGCTA
TTGTCTGTGAAGACCACTATCTGTTTATGGCGCAATATTGGGCCCCAGGA
TAGGATAGCAGAATAAACAGCAAACAGCTCAAGTACACCAATGTGGAATC
CAGAGACGTCAACCGGCCAGGCAACGGAAAACCACATTCCATGGAAGAAA
GCCCCCATTCCCAGGGAAGAAGAAGCATCTGTAAAAAGATGAATGTCTTG
AGAGGAGATTTTCGGAGACTGGAACATAGAGATCCCATTCCACGACGACA
AAAGAGTGGCCCACATGGAGATGTCACGACGTACAGAAACAGAAATGTCA
ATATGATGGTGAAGCTTAGAAACTGATGTGGAAAGACCTATGAGGCGACG
CAGAAAAATTCTACCAGGTTTGATGACTTTGCAAACAAAGGAAAGGGACC
CAATAAACGACAACAACTCGCGCTTAGTACATTTACGTCGAGATAACCAC
AATTCGACATCTTGGTGTAAAGAGGACAACTTATCAGAAGGCAATCTGCA
AGTAAAAGAGACAGAATCAATTTCAATCCCCAAGAACACGAGACATTGAG
AGGGGCCCTCAAGCTTGTCGTCAGCGACAGGCACACCAAGGAAGCGGAAC
AAGGAGAGGATAGCATTGACCTTAGCTTGACAACCCTGTTTTGTGGGAGC
GCATACAAAGAAATCGTCCAAATAATGAATGATAGCAGAAATATGAAACT
TATGCACAAGAATCCAAGTAAGAGCGTCAGCGAAAGTATTGAAAATAAGA
GGAGAGGAGCGAAGACCGAAAGGGAGGCGAATGTCGAAAAAATACTTACC
CAACCACTTATACCCTAACATAGGCCAATCATCAGGATGGACAGGGCAAA
GACGAAAAGCATGCTTGATGTCCACCTTGGCCATGAAACAACCCCTCCCC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042745-exon-sc0003646-1491911889:3754..6525 | TCONS_00042745-exon-sc0003646-1491911889:3754..6525 | Clytia hemisphaerica | exon |
| TCONS_00042745-exon-sc0003646-1510915933:3754..6525 | TCONS_00042745-exon-sc0003646-1510915933:3754..6525 | Clytia hemisphaerica | exon |
| TCONS_00042745-exon-sc0003646-1575043694:3754..6525 | TCONS_00042745-exon-sc0003646-1575043694:3754..6525 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003646 | supercontig | sc0003646:3754..6525 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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