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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042744 ID=TCONS_00042744|Name=TCONS_00042744|organism=Clytia hemisphaerica|type=transcript|length=874bp
AAAATTCCAAAGAAAAATGCCCCAAAAGAAGGCTCCATTATACCATCTTA
CTTCCGACGATGCATTGAAAGTGTTAGAAGAGCAATATATAAAGAAACAA
CAAAAGGAAGAAGAAAAACAAATTAAACTGATGGTCAAACAAAATAAACA
AGAATTGAAATGTAAACAGCAATCGGAAAAACAACAAAAAAGGAAAAGCA
AATCTAAGAAACCGGCAAAGAAAAAACGAAAATTAACAAACAAAATTCAA
CAAGAAAACCAGCCAACAACAAGCCAATCAACAACCAACCAACCAACAGC
AAACAGATCAAAGCGACAGCGAAAAAAGGTCAATTACGCTCTAATGATCA
ACCAAGGAAATTATAATGAGGATGGAAGTGATATTGAAGCAGGAAGTGAG
AATGAGGGACAAGATGAGTGTAAGAGGTGCAAGAGACAGTGGGAGGGAGG
CCAGGATGAGCCTGAGTGGATTCAATGCGAAAAATGTGATCAGTGGATGC
ATGAACACTGCACTCATTTGGCactcatgttttcaaaaatgacaCCGACA
CAGGTCcacaatttcaattttgaatgtgATGAATGTGCTTAACTTTTACC
CTAAGAGTTTGAGAGGTCAGCACCATTTTTAAAAGCTATANAATGACACC
GACACAGGTCcacaatttcaattttgaatgtgATGAATGTGCTTAACTTT
TACCCTAGGAGTTTGAGAGGTCAGCACCATTTTTAAAAGCTAATTCAAGT
TAACACAATCAGcaccttaaaaattgaaatcatgCACCTGTTTTAGTCAG
ATAAAACATTCAGAGACCTGTCATTAAGATAAATCGTGAGAACTATTGTG
TCATTTTTGATAACTTGTTTGATA Run BLAST on NCBI protein sequence of TCONS_00042744-protein >TCONS_00042744-protein ID=TCONS_00042744-protein|Name=TCONS_00042744-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
KFQRKMPQKKAPLYHLTSDDALKVLEEQYIKKQQKEEEKQIKLMVKQNKQ
ELKCKQQSEKQQKRKSKSKKPAKKKRKLTNKIQQENQPTTSQSTTNQPTA
NRSKRQRKKVNYALMINQGNYNEDGSDIEAGSENEGQDECKRCKRQWEGG
QDEPEWIQCEKCDQWMHEHCTHLALMFSKMTPTQVHNFNFECDECA Run BLAST on NCBI transcript from alignment at sc0003644:5278..6151 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042744 ID=TCONS_00042744|Name=TCONS_00042744|organism=Clytia hemisphaerica|type=transcript|length=874bp|location=Sequence derived from alignment at sc0003644:5278..6151 (Clytia hemisphaerica)
TATCAAACAAGTTATCAAAAATGACACAATAGTTCTCACGATTTATCTTA
ATGACAGGTCTCTGAATGTTTTATCTGACTAAAACAGGTGcatgatttca
atttttaaggtgCTGATTGTGTTAACTTGAATTAGCTTTTAAAAATGGTG
CTGACCTCTCAAACTCCTAGGGTAAAAGTTAAGCACATTCATcacattca
aaattgaaattgtgGACCTGTGTCGGTGTCATTNTATAGCTTTTAAAAAT
GGTGCTGACCTCTCAAACTCTTAGGGTAAAAGTTAAGCACATTCATcaca
ttcaaaattgaaattgtgGACCTGTGTCGGtgtcatttttgaaaacatga
gtGCCAAATGAGTGCAGTGTTCATGCATCCACTGATCACATTTTTCGCAT
TGAATCCACTCAGGCTCATCCTGGCCTCCCTCCCACTGTCTCTTGCACCT
CTTACACTCATCTTGTCCCTCATTCTCACTTCCTGCTTCAATATCACTTC
CATCCTCATTATAATTTCCTTGGTTGATCATTAGAGCGTAATTGACCTTT
TTTCGCTGTCGCTTTGATCTGTTTGCTGTTGGTTGGTTGGTTGTTGATTG
GCTTGTTGTTGGCTGGTTTTCTTGTTGAATTTTGTTTGTTAATTTTCGTT
TTTTCTTTGCCGGTTTCTTAGATTTGCTTTTCCTTTTTTGTTGTTTTTCC
GATTGCTGTTTACATTTCAATTCTTGTTTATTTTGTTTGACCATCAGTTT
AATTTGTTTTTCTTCTTCCTTTTGTTGTTTCTTTATATATTGCTCTTCTA
ACACTTTCAATGCATCGTCGGAAGTAAGATGGTATAATGGAGCCTTCTTT
TGGGGCATTTTTCTTTGGAATTTT Coding sequence (CDS) from alignment at sc0003644:5278..6151 >TCONS_00042744 ID=TCONS_00042744|Name=TCONS_00042744|organism=Clytia hemisphaerica|type=CDS|length=591bp|location=Sequence derived from alignment at sc0003644:5278..6151 (Clytia hemisphaerica)
TTAAGCACATTCATcacattcaaaattgaaattgtgGACCTGTGTCGGtg
tcatttttgaaaacatgagtGCCAAATGAGTGCAGTGTTCATGCATCCAC
TGATCACATTTTTCGCATTGAATCCACTCAGGCTCATCCTGGCCTCCCTC
CCACTGTCTCTTGCACCTCTTACACTCATCTTGTCCCTCATTCTCACTTC
CTGCTTCAATATCACTTCCATCCTCATTATAATTTCCTTGGTTGATCATT
AGAGCGTAATTGACCTTTTTTCGCTGTCGCTTTGATCTGTTTGCTGTTGG
TTGGTTGGTTGTTGATTGGCTTGTTGTTGGCTGGTTTTCTTGTTGAATTT
TGTTTGTTAATTTTCGTTTTTTCTTTGCCGGTTTCTTAGATTTGCTTTTC
CTTTTTTGTTGTTTTTCCGATTGCTGTTTACATTTCAATTCTTGTTTATT
TTGTTTGACCATCAGTTTAATTTGTTTTTCTTCTTCCTTTTGTTGTTTCT
TTATATATTGCTCTTCTAACACTTTCAATGCATCGTCGGAAGTAAGATGG
TATAATGGAGCCTTCTTTTGGGGCATTTTTCTTTGGAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042744-exon-sc0003644-1491911889:5278..6151 | TCONS_00042744-exon-sc0003644-1491911889:5278..6151 | Clytia hemisphaerica | exon |
| TCONS_00042744-exon-sc0003644-1510915933:5278..6151 | TCONS_00042744-exon-sc0003644-1510915933:5278..6151 | Clytia hemisphaerica | exon |
| TCONS_00042744-exon-sc0003644-1575043694:5278..6151 | TCONS_00042744-exon-sc0003644-1575043694:5278..6151 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003644 | supercontig | sc0003644:5278..6151 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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