TCONS_00042719 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042719
Unique NameTCONS_00042719
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042719 ID=TCONS_00042719|Name=TCONS_00042719|organism=Clytia hemisphaerica|type=transcript|length=329bp
gaaaattcaggaaaatctacGAAAACAACCGAATTCACCATCAATTTACG
ACCTTTGTAGCCCATCTGAATGTGTTACAAGTGAAGAAGGAAGATCCAAA
GACACACTTGATTGTAAAAAGTGCAATCAAATTGTACACTACATTTGTTC
AAAGCTCCCCATCTATCAAATCCAGTTATGTCTAACATACAAATCGAGAG
CTTTTGTCTGTCAAAACTGTGTCGTGATCACCCCTGATCTATTGGAACGG
GTCAATTCATGTGAAACATCAACAGTTTCAGGATTCCGAAAGGAGATAAA
AGCTTgcgaaaatataatgaaagcccagG
Run BLAST on NCBI

protein sequence of TCONS_00042719-protein

>TCONS_00042719-protein ID=TCONS_00042719-protein|Name=TCONS_00042719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
KIQENLRKQPNSPSIYDLCSPSECVTSEEGRSKDTLDCKKCNQIVHYICS
KLPIYQIQLCLTYKSRAFVCQNCVVITPDLLERVNSCETSTVSGFRKEIK
ACENIMKAQ
Run BLAST on NCBI

transcript from alignment at sc0003631:3165..3493

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042719 ID=TCONS_00042719|Name=TCONS_00042719|organism=Clytia hemisphaerica|type=transcript|length=329bp|location=Sequence derived from alignment at sc0003631:3165..3493 (Clytia hemisphaerica)
CctgggctttcattatattttcgcAAGCTTTTATCTCCTTTCGGAATCCT
GAAACTGTTGATGTTTCACATGAATTGACCCGTTCCAATAGATCAGGGGT
GATCACGACACAGTTTTGACAGACAAAAGCTCTCGATTTGTATGTTAGAC
ATAACTGGATTTGATAGATGGGGAGCTTTGAACAAATGTAGTGTACAATT
TGATTGCACTTTTTACAATCAAGTGTGTCTTTGGATCTTCCTTCTTCACT
TGTAACACATTCAGATGGGCTACAAAGGTCGTAAATTGATGGTGAATTCG
GTTGTTTTCgtagattttcctgaattttc

Coding sequence (CDS) from alignment at sc0003631:3165..3493

>TCONS_00042719 ID=TCONS_00042719|Name=TCONS_00042719|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0003631:3165..3493 (Clytia hemisphaerica)
ctgggctttcattatattttcgcAAGCTTTTATCTCCTTTCGGAATCCTG
AAACTGTTGATGTTTCACATGAATTGACCCGTTCCAATAGATCAGGGGTG
ATCACGACACAGTTTTGACAGACAAAAGCTCTCGATTTGTATGTTAGACA
TAACTGGATTTGATAGATGGGGAGCTTTGAACAAATGTAGTGTACAATTT
GATTGCACTTTTTACAATCAAGTGTGTCTTTGGATCTTCCTTCTTCACTT
GTAACACATTCAGATGGGCTACAAAGGTCGTAAATTGATGGTGAATTCGG
TTGTTTTCgtagattttcctgaatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026526XLOC_026526Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042719-proteinTCONS_00042719-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042719-exon-sc0003631-1491911889:3165..3493TCONS_00042719-exon-sc0003631-1491911889:3165..3493Clytia hemisphaericaexon
TCONS_00042719-exon-sc0003631-1510915933:3165..3493TCONS_00042719-exon-sc0003631-1510915933:3165..3493Clytia hemisphaericaexon
TCONS_00042719-exon-sc0003631-1575043694:3165..3493TCONS_00042719-exon-sc0003631-1575043694:3165..3493Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003631supercontigsc0003631:3165..3493 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.5747	3.7403	7.78527	8.90085	1.59473	0.315045	2.28053	3.068	2.96452	4.21656	4.41255	3.80542	1.88483	2.32135	2.71312	2.25459	0.525451	2.28866	3.27632	4.31218	3.17006	5.14089	0.493955	0.616349	1.74404	1.75547	4.07578	1.19704	0.915305	1.24262
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042719 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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