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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042715 ID=TCONS_00042715|Name=TCONS_00042715|organism=Clytia hemisphaerica|type=transcript|length=1490bp
gaGACatagacattctcagattctagctcaactgaagttgagaataggcC
AAGTTGtatgaaattaattaaatttaGTAAGTTTTTCATTACccaaaaat
aatatatttccCAGCACACGACAAGAATAttgttacaaaaataaaaagta
ttacATATGAAAAAATATGAACATGCTTTTTCAAAAAGCGAATCAAGAGC
TagttcattttgaaattcgaaatACAGTGAGGTCGTCTAGCATACTTTAC
ATTTACATTGGACTTACCGCTATATTTGGCCCAGAATCAACTATAGATCA
CAACTTGTATTGTCTCTAAATTATCTCCAGACAGTTgaggaaatcggcta
tacccgtctTCTATTTTAGTTGTTTAAGAGCTTTCGAATAGCAGTCATGA
TATTGTACGATATCACATCGATTGTTAGTTTCCCGATTTCTTCATGAGAA
ATTGAAAcgtcttcaatttttttccggtAGGAGAATTACGAGTAAACAGA
ATAAAAAATATCGCCATCaataaaattaaaagttatggttAAATATTTAA
ATTCACTGCTTTACGTATCTATTTTCTTAAATCACGCATTAAATGCTCAT
TTCCGAACCAAAGGTTTAACGTAGACCAAAGTACGAACATAATCAAACCA
TGAGTTTGCAAATGATGACATTATTTCGAggagaaattttgttttctttc
tttaagcTGGCTTAAGAACTTACTTTACTAAATAAATTTATAACAACAAT
GACGCTCAAAATcgtcaaaagttaagaacaacgCTCAGCCTGGAATTTAA
GAATTTCAAACAATTCAAGGAAGGTAGTAAAATTCAGGTATGGAGCCTCA
AATTGCTCAAAGTGCCAAGAAATAAGAACAGTCCGACCTAAATAAAAACC
TTGACTACTACTAGTAGGAATTGTTTCTCCAGCGTTTTTATACGGATGAC
TTAacttaagtttttttaaaataataaataatagtGATTccattaaaatg
acaaaaggatGGCGTGTACTTCAGAGATACATTCCATTGATTAGGTAGTC
ACCATCATCCACGGGTACTTTCTTGGGCTTCCCTCTCGCTGCAAATTTGA
AACGATAGATCAGACCAACAATAAGTAGGAGACAAATACACAATGCAATC
AATAACGGTACGGACATGAAGGTATTATTGACAACGATGACTTTCTCTTC
AGTTATTCCATTATCATCCAGTGCGTGCTTCTTCCCGTCTGAAGTAGCTG
CAAAAATATGTAAAACGATAAAAGGTTTAAAGGATTTGGAAGTTAACTTC
ATTTCAAAAACACAGCAATTAGTCAGGCAGAATTGCATACATACCcggac
aaaaatggtgtagagatgTCAGGAATAACAAAAAAGAAGCCCCTCTCCCA
GGAAGATCcctacaccatttttgtcccGGTTTTGGCGGTTTATGACCTAA
TTCTACACGACTAAATGATCAACCACAAAACCCCTGTACC Run BLAST on NCBI protein sequence of TCONS_00042715-protein >TCONS_00042715-protein ID=TCONS_00042715-protein|Name=TCONS_00042715-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MQFCLTNCCVFEMKLTSKSFKPFIVLHIFAATSDGKKHALDDNGITEEKV
IVVNNTFMSVPLLIALCICLLLIVGLIYRFKFAARGKPKKVPVDDGDYLI
NGMYL Run BLAST on NCBI transcript from alignment at sc0003620:2489..3978 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042715 ID=TCONS_00042715|Name=TCONS_00042715|organism=Clytia hemisphaerica|type=transcript|length=1490bp|location=Sequence derived from alignment at sc0003620:2489..3978 (Clytia hemisphaerica)
GGTACAGGGGTTTTGTGGTTGATCATTTAGTCGTGTAGAATTAGGTCATA
AACCGCCAAAACCgggacaaaaatggtgtaggGATCTTCCTGGGAGAGGG
GCTTCTTTTTTGTTATTCCTGAcatctctacaccatttttgtccgGGTAT
GTATGCAATTCTGCCTGACTAATTGCTGTGTTTTTGAAATGAAGTTAACT
TCCAAATCCTTTAAACCTTTTATCGTTTTACATATTTTTGCAGCTACTTC
AGACGGGAAGAAGCACGCACTGGATGATAATGGAATAACTGAAGAGAAAG
TCATCGTTGTCAATAATACCTTCATGTCCGTACCGTTATTGATTGCATTG
TGTATTTGTCTCCTACTTATTGTTGGTCTGATCTATCGTTTCAAATTTGC
AGCGAGAGGGAAGCCCAAGAAAGTACCCGTGGATGATGGTGACTACCTAA
TCAATGGAATGTATCTCTGAAGTACACGCCatccttttgtcattttaatg
gAATCactattatttattattttaaaaaaacttaagtTAAGTCATCCGTA
TAAAAACGCTGGAGAAACAATTCCTACTAGTAGTAGTCAAGGTTTTTATT
TAGGTCGGACTGTTCTTATTTCTTGGCACTTTGAGCAATTTGAGGCTCCA
TACCTGAATTTTACTACCTTCCTTGAATTGTTTGAAATTCTTAAATTCCA
GGCTGAGcgttgttcttaacttttgacgATTTTGAGCGTCATTGTTGTTA
TAAATTTATTTAGTAAAGTAAGTTCTTAAGCCAgcttaaagaaagaaaac
aaaatttctccTCGAAATAATGTCATCATTTGCAAACTCATGGTTTGATT
ATGTTCGTACTTTGGTCTACGTTAAACCTTTGGTTCGGAAATGAGCATTT
AATGCGTGATTTAAGAAAATAGATACGTAAAGCAGTGAATTTAAATATTT
aaccataacttttaattttattGATGGCGATATTTTTTATTCTGTTTACT
CGTAATTCTCCTaccggaaaaaaattgaagacgTTTCAATTTCTCATGAA
GAAATCGGGAAACTAACAATCGATGTGATATCGTACAATATCATGACTGC
TATTCGAAAGCTCTTAAACAACTAAAATAGAagacgggtatagccgattt
cctcAACTGTCTGGAGATAATTTAGAGACAATACAAGTTGTGATCTATAG
TTGATTCTGGGCCAAATATAGCGGTAAGTCCAATGTAAATGTAAAGTATG
CTAGACGACCTCACTGTatttcgaatttcaaaatgaactAGCTCTTGATT
CGCTTTTTGAAAAAGCATGTTCATATTTTTTCATATgtaatactttttat
ttttgtaacaaTATTCTTGTCGTGTGCTGggaaatatattatttttggGT
AATGAAAAACTTACtaaatttaattaatttcataCAACTTGgcctattct
caacttcagttgagctagaatctgagaatgtctatGTCtc Coding sequence (CDS) from alignment at sc0003620:2489..3978 >TCONS_00042715 ID=TCONS_00042715|Name=TCONS_00042715|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0003620:2489..3978 (Clytia hemisphaerica)
ATGCAATTCTGCCTGACTAATTGCTGTGTTTTTGAAATGAAGTTAACTTC
CAAATCCTTTAAACCTTTTATCGTTTTACATATTTTTGCAGCTACTTCAG
ACGGGAAGAAGCACGCACTGGATGATAATGGAATAACTGAAGAGAAAGTC
ATCGTTGTCAATAATACCTTCATGTCCGTACCGTTATTGATTGCATTGTG
TATTTGTCTCCTACTTATTGTTGGTCTGATCTATCGTTTCAAATTTGCAG
CGAGAGGGAAGCCCAAGAAAGTACCCGTGGATGATGGTGACTACCTAATC
AATGGAATGTATCTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042715-exon-sc0003620-1491911889:2489..3978 | TCONS_00042715-exon-sc0003620-1491911889:2489..3978 | Clytia hemisphaerica | exon |
| TCONS_00042715-exon-sc0003620-1510915933:2489..3978 | TCONS_00042715-exon-sc0003620-1510915933:2489..3978 | Clytia hemisphaerica | exon |
| TCONS_00042715-exon-sc0003620-1575043694:2489..3978 | TCONS_00042715-exon-sc0003620-1575043694:2489..3978 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003620 | supercontig | sc0003620:2489..3978 . |
Blast
The following BLAST results are available for this feature:
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