TCONS_00042713 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042713
Unique NameTCONS_00042713
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042713 ID=TCONS_00042713|Name=TCONS_00042713|organism=Clytia hemisphaerica|type=transcript|length=267bp
GTTACAGTTGACCGGCGGTTGATGAAGCCATGTTGTTTGCTAGATAGTAA
TTTCTCTTGATCAAGATATGTCATAATATGGGTTTTGAGAATCTTTTTCA
TTATTCAGCAAACTATGATGTTAAACTAATTGGACGATAATTTTCTgcta
tatttttgtttccttttttatagACAGGTGATACGTTTACAAGCTTCCAG
TCCTTCGGAAGACAACTCTCGTTGAAAGATTTTGTCATTATCAGGAAAAT
CGGTTCTGCGATGTATT
Run BLAST on NCBI

transcript from alignment at sc0003620:323..589

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042713 ID=TCONS_00042713|Name=TCONS_00042713|organism=Clytia hemisphaerica|type=transcript|length=267bp|location=Sequence derived from alignment at sc0003620:323..589 (Clytia hemisphaerica)
AATACATCGCAGAACCGATTTTCCTGATAATGACAAAATCTTTCAACGAG
AGTTGTCTTCCGAAGGACTGGAAGCTTGTAAACGTATCACCTGTctataa
aaaaggaaacaaaaatatagcAGAAAATTATCGTCCAATTAGTTTAACAT
CATAGTTTGCTGAATAATGAAAAAGATTCTCAAAACCCATATTATGACAT
ATCTTGATCAAGAGAAATTACTATCTAGCAAACAACATGGCTTCATCAAC
CGCCGGTCAACTGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026520XLOC_026520Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042713-exon-sc0003620-1491911889:323..589TCONS_00042713-exon-sc0003620-1491911889:323..589Clytia hemisphaericaexon
TCONS_00042713-exon-sc0003620-1510915933:323..589TCONS_00042713-exon-sc0003620-1510915933:323..589Clytia hemisphaericaexon
TCONS_00042713-exon-sc0003620-1575043694:323..589TCONS_00042713-exon-sc0003620-1575043694:323..589Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003620supercontigsc0003620:323..589 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.44832	0.776638	3.08804	5.29328	4.7875	1.89157	1.20158	7.38757	2.9916	1.85279	2.35205	3.05516	1.96755	0	0.82467	0.79036	0	1.00814	1.25794	2.35806	1.10974	6.50259	1.03513	1.6806	9.45481	9.0262	3.83857	3.88734	2.24566	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042713 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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