TCONS_00042711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042711
Unique NameTCONS_00042711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2020

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042711 ID=TCONS_00042711|Name=TCONS_00042711|organism=Clytia hemisphaerica|type=transcript|length=2020bp
gccgcgttgaattgtgggattgcaactcgtacaaatgtcaaaaaaagtga
aaagtaataattatgacgtatgcattgcggagcgctattgaaCTGAGGTT
GGAAAAGGGGAAAGAATCGAATTACATAATTGGCAAATTATTTTCTGTTT
ATATTTTAGCTGCACCACGTTACGCACCGAAAGATGTTCAATTAGTTGGT
GCTGGGTCTACGGTAGCCGAAATCAAATGGATTTCCGTTCCACAAAGTGA
TCGACCCTACTTATATAACATTCTCATTCAAGaTGGAACTGACGATGATC
AAACGAAAAATATTCGTACAGGATTTGCCGCCATCTTGATTAGTGCTACA
CTAGACGGGTTATTACCCAATCGAGAATACACCATCAAGATTCGTGCTGT
CAATGTCGTTGGTAGTGGTATCTATTCGGATCCACTGAAATTCAAAACCA
CCCGATTAGaTTTACCTACGCTCGAAATGCCTAAGAACGCATCAGTTACA
CCAATCTTATACCAAGAATCAACCAGTATCAAATTGTCCTGGTCATCACC
AACAGATCTCAAAGGAAACAATCCATCTTTGATCACCTACCAAGTCAACT
ATTGTAGTATCAACAAAAAATGTGACAAGTTTACTGAGAAAGCTAGCAAA
ACGACAACACTGTTAACTAACCTGCAACGAAGTCATATTTATCAGTTCAC
GATTCGCGTTTTTAATGAGAACATGGAGAGCGATGACGAGAAATCAACTT
ACACTAACATATTCAAAACAGTTTCCAAGGACACCTGTAGACCGAACTTC
TTCACATGTGCACAATCACCACAATGTGTTCAACAAGACAGAAAATGTGA
TGGTCTCATCAATTGTTCAGATCGCAGCGACGAATCTGAAGCTGCTGGAT
GTGAATTACCACATTTCTTTGGCAAGATCAGCATCAAAGACGTCTCATAC
AATACAGCAATACTTCAATTCGAACCTAGCCGGGATCCAAAGCAAAGAAT
CAGAGGCTACGAAATCGAAAACATGGTTACAAAAGAAACACAGCTCATTC
GTCATTCAACATTATCTCACGAAAGAATCATCAAAGTCACCTTTGTTGGT
TTAAAGCCCTTGACACATTATGAATTCCGTGTTCGCGCTGTGAATCCAAC
GGGTACAGGGCTTTGGTCACCTCCTTCGAAGACTAGAACAACAGctAAGC
CAACACCCAAACCTACCACAACTGACCCTAGATCTGGCGAAACTACGACC
TCAACACGGCGTCCAAAACCAACTATGGAGCCAGCGGAGAGTTCATCAGG
TCTTTCGAATAACGAGAAAGTTGGTGTTGCAGTGGCAATTATTCTTGCTG
TTTTGTTGGTGATCATAACTGTGGTAATTGTAACCAGAGACAAGTCAAAG
AATGGTAAAAAACCAGAATATACTGTAAAGCAAGGTGTATCTAATCCAAG
TTACGTCGAAGGAGAAGTTTGATGGCgaaatctttttgtaaattatttta
tttagagGTTAGAAGTGCTCGACTGGAagatcgaaaatcgacccttgaAA
AGACATATATTTCGGATATTTGAATAGTCTAGACGCCCAAGCGTCTTGAC
GGGGAGCGGTTTTATAGGGTTCCAGATTCCGCCATTCCGCCATTCCGCCA
TTCTATCAAACAAAATAGCTtaagtcaaaaattttttacCATTTCTTGCT
TATTCTGAAATTCCAGCcgaattttttgctaaattccgtttctCCGTACT
TAAACAGACCCATTTACCGTCTCCAAAAGTAGAAATTGTTTCCGATATTC
CATCTTTCCATCGAAATTAGTTAAGTCTGAAAATGGCACCCTTATCAATA
GATAGAATGTCCGTTTGTTTATTTTAATTAATTACATTCAAAGTGTGTTA
AATTAACATAAATACCGGTTTGGCTTCCAGCGGAAAATATTGtatattta
atatttatttctttgttttatttcttttattgagaATTTATTTTACCAAA
GATTATTACATAATAAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00042711-protein

>TCONS_00042711-protein ID=TCONS_00042711-protein|Name=TCONS_00042711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=469bp
MTYALRSAIELRLEKGKESNYIIGKLFSVYILAAPRYAPKDVQLVGAGST
VAEIKWISVPQSDRPYLYNILIQDGTDDDQTKNIRTGFAAILISATLDGL
LPNREYTIKIRAVNVVGSGIYSDPLKFKTTRLDLPTLEMPKNASVTPILY
QESTSIKLSWSSPTDLKGNNPSLITYQVNYCSINKKCDKFTEKASKTTTL
LTNLQRSHIYQFTIRVFNENMESDDEKSTYTNIFKTVSKDTCRPNFFTCA
QSPQCVQQDRKCDGLINCSDRSDESEAAGCELPHFFGKISIKDVSYNTAI
LQFEPSRDPKQRIRGYEIENMVTKETQLIRHSTLSHERIIKVTFVGLKPL
THYEFRVRAVNPTGTGLWSPPSKTRTTAKPTPKPTTTDPRSGETTTSTRR
PKPTMEPAESSSGLSNNEKVGVAVAIILAVLLVIITVVIVTRDKSKNGKK
PEYTVKQGVSNPSYVEGEV
Run BLAST on NCBI

transcript from alignment at sc0003618:4934..9078+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042711 ID=TCONS_00042711|Name=TCONS_00042711|organism=Clytia hemisphaerica|type=transcript|length=4145bp|location=Sequence derived from alignment at sc0003618:4934..9078+ (Clytia hemisphaerica)
gccgcgttgaattgtgggattgcaactcgtacaaatgtcaaaaaaagtga
aaagtaataattatgacgtatgcattgcggagcgctattgaaCTGAGGTT
GGAAAAGGGGAAAGAATCGAATTACATAATTGGCAAATTATTTTCTGTTT
ATATTTTAGCTGCACCACGTTACGCACCGAAAGATGTTCAATTAGTTGGT
GCTGGGTCTACGGTAGCCGAAATCAAATGGATTTCCGTTCCACAAAGTGA
TCGACCCTACTTATATAACATTCTCATTCAAGGTATAACGACATTCTTAA
CTTCCCTAGTTAAGCTAGTTTTACTTGGAGCACTTAGATTTTTGGTGCTG
TGGAGCTGCACCTTACCGAGAAAATGGGAATCCAATCCTTAATCAAAAAG
TTTGATTCTTTATGTAAAACAATAATTGattaatttcttcttctttcaga
TGGAACTGACGATGATCAAACGAAAAATATTCGTACAGGATTTGCCGCCA
TCTTGATTAGTGCTACACTAGACGGGTTATTACCCAATCGAGAATACACC
ATCAAGATTCGTGCTGTCAATGTCGTTGGTAGTGGTATCTATTCGGATCC
ACTGAAATTCAAAACCACCCGATTAGGTAAAtgataataacaataataat
ataGTGTAGTCTCTTTAACTTCCATAACTCGAGTTAACCCTAATCTGCTC
GAAAAATTTTTATGGTCACTTCAGTCAACAATCCCTTATAAACCTTACAT
TATAAGTCGTAATTTCCTTAAATCGGACACATTTGGGTAGCCCTTATTTT
TGGACCCATTTATTGAAAACCTAGGTTAAAGCCCAAGGGctcaaatttca
aactcattttaaaCCAAAACCAACTATAAAATCTGAAAGCTcttgaaaaa
ctatatagaagagtTTTAAGCGAGTATGGCCGATTTCTGTACTGAACGGG
AGTTATTTGATGAAGAAGTGGTGGTCccccctcattttggtcataaaatC
GCTTATAAAATGACACTTCTACATCAAAAAACTCCCATTCAGTACAGAAA
TCGGCCATACtcgcttaaaagtcttctatatagtctTCTAttggttttgg
cctaaaataagtttgaaatttccataaaaattggGCCCTTTGGGCTTTAG
CCTAGGTTTTCAATAAATAGGTCCAAATATTAGGGCTACCCTTAATAAAA
CTTTTCTGGGCCGCTCTTCTAATATCAATCCACAGGGTACTAGGCATGTC
TGGTCCAAATTTGgtgctttgttccaaatttgcacgataattacaccaat
caggccTACTAATAGAATCTTACCTACtaacaaaatttcaacaattattt
caacattcaatattttctttagaTTTACCTACGCTCGAAATGCCTAAGAA
CGCATCAGTTACACCAATCTTATACCAAGAATCAACCAGTATCAAATTGT
CCTGGTCATCACCAACAGATCTCAAAGGAAACAATCCATCTTTGATCACC
TACCAAGTCAACTATTGTAGTATCAACAAAAAATGTGACAAGTTTACTGA
GAAAGCTAGCAAAACGACAACACTGTTAACTAACCTGCAACGAAGTCATA
TTTATCAGTTCACGATTCGCGTTTTTAATGAGAACATGGAGAGCGATGAC
GAGAAATCAACTTACACTAACATATTCAAAACAGTTTCCAAGGGTAAGGT
TTTACACCAGGGAAAGTTATAAAACAACGTAAAAACcaaattgaacaaaa
tatttaactttCCATCGTCCTGGTTTTACCATTAGAATTAATACACTAGG
GGACCTTATAGATAGATAAAGAGAGCCGTATTTTATTTTGATAGATAGCC
CAGTATTAAGGGCTTTTAAAGgtagtctttcgattgttttcaaaaGGTTC
ACAACCAGCTTACTCGAATATCTATAAACTGAACAGAACATTGAAAGAAG
CTTCCACCCTAAATTTTTAGCGCTGACACGCCTTAGACCACCTTAAACCA
CTCGTATTCCGTCAAAAAATTCTTAACTGACTTTATTTATTTCTCTTCAT
TAGACACCTGTAGACCGAACTTCTTCACATGTGCACAATCACCACAATGT
GTTCAACAAGACAGAAAATGTGATGGTCTCATCAATTGTTCAGATCGCAG
CGACGAATCTGAAGCTGCTGGATGTGGTAAGATCACCATTCGTTTCTTAT
TTATACAATGGTTtatgaaaattgtcaaaatctAGACTCCGATAGTGACA
CTCTGATCGATGTTTAATCTAATGAGGTGCAAAAATCACAGTGGAGCCAA
AAATATACTAAGATGTTTAATATTTTCCTTACATTTTGGGCAGCTTATTT
TATGATGAGAAACAAATAAATCTAGAATAAAACATAATCAATCGAAATAA
CCAACCTCGTCTCCAGGCTTATCTACGCAACTGatagacgccagagaata
tcaACTGGCGCTATTAGTAAGCATTAAAAGCCGATAATACGTAGGGAACG
AGGTTGCCAAAATAACAAGAGTGGTGTATTCAATGAGGTCATTGTGAAGT
TTCATGTCAAAGATATTTCCAGAGCTGTTATAGAATTAGAAatttatatt
ctttttttctCCATAGAATTACCACATTTCTTTGGCAAGATCAGCATCAA
AGACGTCTCATACAATACAGCAATACTTCAATTCGAACCTAGCCGGGATC
CAAAGCAAAGAATCAGAGGCTACGAAATCGAAAACATGGTTACAAAAGAA
ACACAGCTCATTCGTCATTCAACATTATCTCACGAAAGAATCATCAAAGT
CACCTTTGTTGGTTTAAAGCCCTTGACACATTATGAATTCCGTGTTCGCG
CTGTGAATCCAACGGGTACAGGGCTTTGGTCACCTCCTTCGAAGACTAGA
ACAACAGgtattaatatttcttttcaacaaattttactCTGTGCTCTATT
TTTAACACTACCATGAGTTTTTTAAGATCCACTACTTGCTGATATAAGTT
TTTTAAGACTCTGTAAGACTTTACACCAAAATCTTTGAGAGCTTTCCTCC
CAGGACCTCCTTTGTGATGACTCATAAGAGCCGTCCTTTGAAAGGACTAA
TTTTAGTGAGAattaattttagcaattttggTGAGTTTTGAAGAAGTCTG
CGCCTAAATTGGTTCtcgctaaaattgaaaaaattgcttcCTCGCAAAAT
GTTAGTTCTctctcaaaattaaaaaaagcgtCAATCTCTAAAGTTTCACC
TcgccaaatttataaagaatcAATCAGAGAGGGTAGCCGTATAacccaaa
atcaatttaaatttttcagctAAGCCAACACCCAAACCTACCACAACTGA
CCCTAGATCTGGCGAAACTACGACCTCAACACGGCGTCCAAAACCAACTA
TGGAGCCAGCGGAGAGTTCATCAGGTCTTTCGAATAACGAGAAAGTTGGT
GTTGCAGTGGCAATTATTCTTGCTGTTTTGTTGGTGATCATAACTGTGGT
AATTGTAACCAGAGACAAGTCAAAGAATGGTAAAAAACCAGAATATACTG
TAAAGCAAGGTGTATCTAATCCAAGTTACGTCGAAGGAGAAGTTTGATGG
CgaaatctttttgtaaattattttatttagagGTTAGAAGTGCTCGACTG
GAagatcgaaaatcgacccttgaAAAGACATATATTTCGGATATTTGAAT
AGTCTAGACGCCCAAGCGTCTTGACGGGGAGCGGTTTTATAGGGTTCCAG
ATTCCGCCATTCCGCCATTCCGCCATTCTATCAAACAAAATAGCTtaagt
caaaaattttttacCATTTCTTGCTTATTCTGAAATTCCAGCcgaatttt
ttgctaaattccgtttctCCGTACTTAAACAGACCCATTTACCGTCTCCA
AAAGTAGAAATTGTTTCCGATATTCCATCTTTCCATCGAAATTAGTTAAG
TCTGAAAATGGCACCCTTATCAATAGATAGAATGTCCGTTTGTTTATTTT
AATTAATTACATTCAAAGTGTGTTAAATTAACATAAATACCGGTTTGGCT
TCCAGCGGAAAATATTGtatatttaatatttatttctttgttttatttct
tttattgagaATTTATTTTACCAAAGATTATTACATAATAAAAAC

Coding sequence (CDS) from alignment at sc0003618:4934..9078+

>TCONS_00042711 ID=TCONS_00042711|Name=TCONS_00042711|organism=Clytia hemisphaerica|type=CDS|length=8460bp|location=Sequence derived from alignment at sc0003618:4934..9078+ (Clytia hemisphaerica)
atgacgtatgcattgcggagcgctattgaaCTGAGGTTGGAAAAGGGGAA
AGAATCGAATTACATAATTGGCAAATTATTTTCTGTTTATATTTTAGCTG
CACCACGTTACGCACCGAAAGATGTTCAATTAGTTGGTGCTGGGTCTACG
GTAGCCGAAATCAAATGGATTTCCGTTCCACAAAGTGATCGACCCTACTT
ATATAACATTCTCATTCAAGaTGGAACTGACGATGATCAAACGAAAAATA
TTCGTACAGGATTTGCCGCCATCTTGATTAGTGCTACACTAGACGGGTTA
TTACCCAATCGAGAATACACCATCAAGATTCGTGCTGTCAATGTCGTTGG
TAGTGGTATCTATTCGGATCCACTGAAATTCAAAACCACCCGATTAGaTT
TACCTACGCTCGAAATGCCTAAGAACGCATCAGTTACACCAATCTTATAC
CAAGAATCAACCAGTATCAAATTGTCCTGGTCATCACCAACAGATCTCAA
AGGAAACAATCCATCTTTGATCACCTACCAAGTCAACTATTGTAGTATCA
ACAAAAAATGTGACAAGTTTACTGAGAAAGCTAGCAAAACGACAACACTG
TTAACTAACCTGCAACGAAGTCATATTTATCAGTTCACGATTCGCGTTTT
TAATGAGAACATGGAGAGCGATGACGAGAAATCAACTTACACTAACATAT
TCAAAACAGTTTCCAAGGACACCTGTAGACCGAACTTCTTCACATGTGCA
CAATCACCACAATGTGTTCAACAAGACAGAAAATGTGATGGTCTCATCAA
TTGTTCAGATCGCAGCGACGAATCTGAAGCTGCTGGATGTGAATTACCAC
ATTTCTTTGGCAAGATCAGCATCAAAGACGTCTCATACAATACAGCAATA
CTTCAATTCGAACCTAGCCGGGATCCAAAGCAAAGAATCAGAGGCTACGA
AATCGAAAACATGGTTACAAAAGAAACACAGCTCATTCGTCATTCAACAT
TATCTCACGAAAGAATCATCAAAGTCACCTTTGTTGGTTTAAAGCCCTTG
ACACATTATGAATTCCGTGTTCGCGCTGTGAATCCAACGGGTACAGGGCT
TTGGTCACCTCCTTCGAAGACTAGAACAACAGctAAGCCAACACCCAAAC
CTACCACAACTGACCCTAGATCTGGCGAAACTACGACCTCAACACGGCGT
CCAAAACCAACTATGGAGCCAGCGGAGAGTTCATCAGGTCTTTCGAATAA
CGAGAAAGTTGGTGTTGCAGTGGCAATTATTCTTGCTGTTTTGTTGGTGA
TCATAACTGTGGTAATTGTAACCAGAGACAAGTCAAAGAATGGTAAAAAA
CCAGAATATACTGTAAAGCAAGGTGTATCTAATCCAAGTTACGTCGAAGG
AGAAGTTTGAatgacgtatgcattgcggagcgctattgaaCTGAGGTTGG
AAAAGGGGAAAGAATCGAATTACATAATTGGCAAATTATTTTCTGTTTAT
ATTTTAGCTGCACCACGTTACGCACCGAAAGATGTTCAATTAGTTGGTGC
TGGGTCTACGGTAGCCGAAATCAAATGGATTTCCGTTCCACAAAGTGATC
GACCCTACTTATATAACATTCTCATTCAAGaTGGAACTGACGATGATCAA
ACGAAAAATATTCGTACAGGATTTGCCGCCATCTTGATTAGTGCTACACT
AGACGGGTTATTACCCAATCGAGAATACACCATCAAGATTCGTGCTGTCA
ATGTCGTTGGTAGTGGTATCTATTCGGATCCACTGAAATTCAAAACCACC
CGATTAGaTTTACCTACGCTCGAAATGCCTAAGAACGCATCAGTTACACC
AATCTTATACCAAGAATCAACCAGTATCAAATTGTCCTGGTCATCACCAA
CAGATCTCAAAGGAAACAATCCATCTTTGATCACCTACCAAGTCAACTAT
TGTAGTATCAACAAAAAATGTGACAAGTTTACTGAGAAAGCTAGCAAAAC
GACAACACTGTTAACTAACCTGCAACGAAGTCATATTTATCAGTTCACGA
TTCGCGTTTTTAATGAGAACATGGAGAGCGATGACGAGAAATCAACTTAC
ACTAACATATTCAAAACAGTTTCCAAGGACACCTGTAGACCGAACTTCTT
CACATGTGCACAATCACCACAATGTGTTCAACAAGACAGAAAATGTGATG
GTCTCATCAATTGTTCAGATCGCAGCGACGAATCTGAAGCTGCTGGATGT
GAATTACCACATTTCTTTGGCAAGATCAGCATCAAAGACGTCTCATACAA
TACAGCAATACTTCAATTCGAACCTAGCCGGGATCCAAAGCAAAGAATCA
GAGGCTACGAAATCGAAAACATGGTTACAAAAGAAACACAGCTCATTCGT
CATTCAACATTATCTCACGAAAGAATCATCAAAGTCACCTTTGTTGGTTT
AAAGCCCTTGACACATTATGAATTCCGTGTTCGCGCTGTGAATCCAACGG
GTACAGGGCTTTGGTCACCTCCTTCGAAGACTAGAACAACAGctAAGCCA
ACACCCAAACCTACCACAACTGACCCTAGATCTGGCGAAACTACGACCTC
AACACGGCGTCCAAAACCAACTATGGAGCCAGCGGAGAGTTCATCAGGTC
TTTCGAATAACGAGAAAGTTGGTGTTGCAGTGGCAATTATTCTTGCTGTT
TTGTTGGTGATCATAACTGTGGTAATTGTAACCAGAGACAAGTCAAAGAA
TGGTAAAAAACCAGAATATACTGTAAAGCAAGGTGTATCTAATCCAAGTT
ACGTCGAAGGAGAAGTTTGAatgacgtatgcattgcggagcgctattgaa
CTGAGGTTGGAAAAGGGGAAAGAATCGAATTACATAATTGGCAAATTATT
TTCTGTTTATATTTTAGCTGCACCACGTTACGCACCGAAAGATGTTCAAT
TAGTTGGTGCTGGGTCTACGGTAGCCGAAATCAAATGGATTTCCGTTCCA
CAAAGTGATCGACCCTACTTATATAACATTCTCATTCAAGaTGGAACTGA
CGATGATCAAACGAAAAATATTCGTACAGGATTTGCCGCCATCTTGATTA
GTGCTACACTAGACGGGTTATTACCCAATCGAGAATACACCATCAAGATT
CGTGCTGTCAATGTCGTTGGTAGTGGTATCTATTCGGATCCACTGAAATT
CAAAACCACCCGATTAGaTTTACCTACGCTCGAAATGCCTAAGAACGCAT
CAGTTACACCAATCTTATACCAAGAATCAACCAGTATCAAATTGTCCTGG
TCATCACCAACAGATCTCAAAGGAAACAATCCATCTTTGATCACCTACCA
AGTCAACTATTGTAGTATCAACAAAAAATGTGACAAGTTTACTGAGAAAG
CTAGCAAAACGACAACACTGTTAACTAACCTGCAACGAAGTCATATTTAT
CAGTTCACGATTCGCGTTTTTAATGAGAACATGGAGAGCGATGACGAGAA
ATCAACTTACACTAACATATTCAAAACAGTTTCCAAGGACACCTGTAGAC
CGAACTTCTTCACATGTGCACAATCACCACAATGTGTTCAACAAGACAGA
AAATGTGATGGTCTCATCAATTGTTCAGATCGCAGCGACGAATCTGAAGC
TGCTGGATGTGAATTACCACATTTCTTTGGCAAGATCAGCATCAAAGACG
TCTCATACAATACAGCAATACTTCAATTCGAACCTAGCCGGGATCCAAAG
CAAAGAATCAGAGGCTACGAAATCGAAAACATGGTTACAAAAGAAACACA
GCTCATTCGTCATTCAACATTATCTCACGAAAGAATCATCAAAGTCACCT
TTGTTGGTTTAAAGCCCTTGACACATTATGAATTCCGTGTTCGCGCTGTG
AATCCAACGGGTACAGGGCTTTGGTCACCTCCTTCGAAGACTAGAACAAC
AGctAAGCCAACACCCAAACCTACCACAACTGACCCTAGATCTGGCGAAA
CTACGACCTCAACACGGCGTCCAAAACCAACTATGGAGCCAGCGGAGAGT
TCATCAGGTCTTTCGAATAACGAGAAAGTTGGTGTTGCAGTGGCAATTAT
TCTTGCTGTTTTGTTGGTGATCATAACTGTGGTAATTGTAACCAGAGACA
AGTCAAAGAATGGTAAAAAACCAGAATATACTGTAAAGCAAGGTGTATCT
AATCCAAGTTACGTCGAAGGAGAAGTTTGAatgacgtatgcattgcggag
cgctattgaaCTGAGGTTGGAAAAGGGGAAAGAATCGAATTACATAATTG
GCAAATTATTTTCTGTTTATATTTTAGCTGCACCACGTTACGCACCGAAA
GATGTTCAATTAGTTGGTGCTGGGTCTACGGTAGCCGAAATCAAATGGAT
TTCCGTTCCACAAAGTGATCGACCCTACTTATATAACATTCTCATTCAAG
aTGGAACTGACGATGATCAAACGAAAAATATTCGTACAGGATTTGCCGCC
ATCTTGATTAGTGCTACACTAGACGGGTTATTACCCAATCGAGAATACAC
CATCAAGATTCGTGCTGTCAATGTCGTTGGTAGTGGTATCTATTCGGATC
CACTGAAATTCAAAACCACCCGATTAGaTTTACCTACGCTCGAAATGCCT
AAGAACGCATCAGTTACACCAATCTTATACCAAGAATCAACCAGTATCAA
ATTGTCCTGGTCATCACCAACAGATCTCAAAGGAAACAATCCATCTTTGA
TCACCTACCAAGTCAACTATTGTAGTATCAACAAAAAATGTGACAAGTTT
ACTGAGAAAGCTAGCAAAACGACAACACTGTTAACTAACCTGCAACGAAG
TCATATTTATCAGTTCACGATTCGCGTTTTTAATGAGAACATGGAGAGCG
ATGACGAGAAATCAACTTACACTAACATATTCAAAACAGTTTCCAAGGAC
ACCTGTAGACCGAACTTCTTCACATGTGCACAATCACCACAATGTGTTCA
ACAAGACAGAAAATGTGATGGTCTCATCAATTGTTCAGATCGCAGCGACG
AATCTGAAGCTGCTGGATGTGAATTACCACATTTCTTTGGCAAGATCAGC
ATCAAAGACGTCTCATACAATACAGCAATACTTCAATTCGAACCTAGCCG
GGATCCAAAGCAAAGAATCAGAGGCTACGAAATCGAAAACATGGTTACAA
AAGAAACACAGCTCATTCGTCATTCAACATTATCTCACGAAAGAATCATC
AAAGTCACCTTTGTTGGTTTAAAGCCCTTGACACATTATGAATTCCGTGT
TCGCGCTGTGAATCCAACGGGTACAGGGCTTTGGTCACCTCCTTCGAAGA
CTAGAACAACAGctAAGCCAACACCCAAACCTACCACAACTGACCCTAGA
TCTGGCGAAACTACGACCTCAACACGGCGTCCAAAACCAACTATGGAGCC
AGCGGAGAGTTCATCAGGTCTTTCGAATAACGAGAAAGTTGGTGTTGCAG
TGGCAATTATTCTTGCTGTTTTGTTGGTGATCATAACTGTGGTAATTGTA
ACCAGAGACAAGTCAAAGAATGGTAAAAAACCAGAATATACTGTAAAGCA
AGGTGTATCTAATCCAAGTTACGTCGAAGGAGAAGTTTGAatgacgtatg
cattgcggagcgctattgaaCTGAGGTTGGAAAAGGGGAAAGAATCGAAT
TACATAATTGGCAAATTATTTTCTGTTTATATTTTAGCTGCACCACGTTA
CGCACCGAAAGATGTTCAATTAGTTGGTGCTGGGTCTACGGTAGCCGAAA
TCAAATGGATTTCCGTTCCACAAAGTGATCGACCCTACTTATATAACATT
CTCATTCAAGaTGGAACTGACGATGATCAAACGAAAAATATTCGTACAGG
ATTTGCCGCCATCTTGATTAGTGCTACACTAGACGGGTTATTACCCAATC
GAGAATACACCATCAAGATTCGTGCTGTCAATGTCGTTGGTAGTGGTATC
TATTCGGATCCACTGAAATTCAAAACCACCCGATTAGaTTTACCTACGCT
CGAAATGCCTAAGAACGCATCAGTTACACCAATCTTATACCAAGAATCAA
CCAGTATCAAATTGTCCTGGTCATCACCAACAGATCTCAAAGGAAACAAT
CCATCTTTGATCACCTACCAAGTCAACTATTGTAGTATCAACAAAAAATG
TGACAAGTTTACTGAGAAAGCTAGCAAAACGACAACACTGTTAACTAACC
TGCAACGAAGTCATATTTATCAGTTCACGATTCGCGTTTTTAATGAGAAC
ATGGAGAGCGATGACGAGAAATCAACTTACACTAACATATTCAAAACAGT
TTCCAAGGACACCTGTAGACCGAACTTCTTCACATGTGCACAATCACCAC
AATGTGTTCAACAAGACAGAAAATGTGATGGTCTCATCAATTGTTCAGAT
CGCAGCGACGAATCTGAAGCTGCTGGATGTGAATTACCACATTTCTTTGG
CAAGATCAGCATCAAAGACGTCTCATACAATACAGCAATACTTCAATTCG
AACCTAGCCGGGATCCAAAGCAAAGAATCAGAGGCTACGAAATCGAAAAC
ATGGTTACAAAAGAAACACAGCTCATTCGTCATTCAACATTATCTCACGA
AAGAATCATCAAAGTCACCTTTGTTGGTTTAAAGCCCTTGACACATTATG
AATTCCGTGTTCGCGCTGTGAATCCAACGGGTACAGGGCTTTGGTCACCT
CCTTCGAAGACTAGAACAACAGctAAGCCAACACCCAAACCTACCACAAC
TGACCCTAGATCTGGCGAAACTACGACCTCAACACGGCGTCCAAAACCAA
CTATGGAGCCAGCGGAGAGTTCATCAGGTCTTTCGAATAACGAGAAAGTT
GGTGTTGCAGTGGCAATTATTCTTGCTGTTTTGTTGGTGATCATAACTGT
GGTAATTGTAACCAGAGACAAGTCAAAGAATGGTAAAAAACCAGAATATA
CTGTAAAGCAAGGTGTATCTAATCCAAGTTACGTCGAAGGAGAAGTTTGA
atgacgtatgcattgcggagcgctattgaaCTGAGGTTGGAAAAGGGGAA
AGAATCGAATTACATAATTGGCAAATTATTTTCTGTTTATATTTTAGCTG
CACCACGTTACGCACCGAAAGATGTTCAATTAGTTGGTGCTGGGTCTACG
GTAGCCGAAATCAAATGGATTTCCGTTCCACAAAGTGATCGACCCTACTT
ATATAACATTCTCATTCAAGaTGGAACTGACGATGATCAAACGAAAAATA
TTCGTACAGGATTTGCCGCCATCTTGATTAGTGCTACACTAGACGGGTTA
TTACCCAATCGAGAATACACCATCAAGATTCGTGCTGTCAATGTCGTTGG
TAGTGGTATCTATTCGGATCCACTGAAATTCAAAACCACCCGATTAGaTT
TACCTACGCTCGAAATGCCTAAGAACGCATCAGTTACACCAATCTTATAC
CAAGAATCAACCAGTATCAAATTGTCCTGGTCATCACCAACAGATCTCAA
AGGAAACAATCCATCTTTGATCACCTACCAAGTCAACTATTGTAGTATCA
ACAAAAAATGTGACAAGTTTACTGAGAAAGCTAGCAAAACGACAACACTG
TTAACTAACCTGCAACGAAGTCATATTTATCAGTTCACGATTCGCGTTTT
TAATGAGAACATGGAGAGCGATGACGAGAAATCAACTTACACTAACATAT
TCAAAACAGTTTCCAAGGACACCTGTAGACCGAACTTCTTCACATGTGCA
CAATCACCACAATGTGTTCAACAAGACAGAAAATGTGATGGTCTCATCAA
TTGTTCAGATCGCAGCGACGAATCTGAAGCTGCTGGATGTGAATTACCAC
ATTTCTTTGGCAAGATCAGCATCAAAGACGTCTCATACAATACAGCAATA
CTTCAATTCGAACCTAGCCGGGATCCAAAGCAAAGAATCAGAGGCTACGA
AATCGAAAACATGGTTACAAAAGAAACACAGCTCATTCGTCATTCAACAT
TATCTCACGAAAGAATCATCAAAGTCACCTTTGTTGGTTTAAAGCCCTTG
ACACATTATGAATTCCGTGTTCGCGCTGTGAATCCAACGGGTACAGGGCT
TTGGTCACCTCCTTCGAAGACTAGAACAACAGctAAGCCAACACCCAAAC
CTACCACAACTGACCCTAGATCTGGCGAAACTACGACCTCAACACGGCGT
CCAAAACCAACTATGGAGCCAGCGGAGAGTTCATCAGGTCTTTCGAATAA
CGAGAAAGTTGGTGTTGCAGTGGCAATTATTCTTGCTGTTTTGTTGGTGA
TCATAACTGTGGTAATTGTAACCAGAGACAAGTCAAAGAATGGTAAAAAA
CCAGAATATACTGTAAAGCAAGGTGTATCTAATCCAAGTTACGTCGAAGG
AGAAGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026518XLOC_026518Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042711-proteinTCONS_00042711-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042711-exon-sc0003618-1491911889:4934..5215TCONS_00042711-exon-sc0003618-1491911889:4934..5215Clytia hemisphaericaexon
TCONS_00042711-exon-sc0003618-1510915933:4934..5215TCONS_00042711-exon-sc0003618-1510915933:4934..5215Clytia hemisphaericaexon
TCONS_00042711-exon-sc0003618-1575043694:4934..5215TCONS_00042711-exon-sc0003618-1575043694:4934..5215Clytia hemisphaericaexon
TCONS_00042711-exon-sc0003618-1491911889:5383..5559TCONS_00042711-exon-sc0003618-1491911889:5383..5559Clytia hemisphaericaexon
TCONS_00042711-exon-sc0003618-1510915933:5383..5559TCONS_00042711-exon-sc0003618-1510915933:5383..5559Clytia hemisphaericaexon
TCONS_00042711-exon-sc0003618-1575043694:5383..5559TCONS_00042711-exon-sc0003618-1575043694:5383..5559Clytia hemisphaericaexon
TCONS_00042711-exon-sc0003618-1491911889:6306..6626TCONS_00042711-exon-sc0003618-1491911889:6306..6626Clytia hemisphaericaexon
TCONS_00042711-exon-sc0003618-1510915933:6306..6626TCONS_00042711-exon-sc0003618-1510915933:6306..6626Clytia hemisphaericaexon
TCONS_00042711-exon-sc0003618-1575043694:6306..6626TCONS_00042711-exon-sc0003618-1575043694:6306..6626Clytia hemisphaericaexon
TCONS_00042711-exon-sc0003618-1491911889:6987..7109TCONS_00042711-exon-sc0003618-1491911889:6987..7109Clytia hemisphaericaexon
TCONS_00042711-exon-sc0003618-1510915933:6987..7109TCONS_00042711-exon-sc0003618-1510915933:6987..7109Clytia hemisphaericaexon
TCONS_00042711-exon-sc0003618-1575043694:6987..7109TCONS_00042711-exon-sc0003618-1575043694:6987..7109Clytia hemisphaericaexon
TCONS_00042711-exon-sc0003618-1491911889:7550..7840TCONS_00042711-exon-sc0003618-1491911889:7550..7840Clytia hemisphaericaexon
TCONS_00042711-exon-sc0003618-1510915933:7550..7840TCONS_00042711-exon-sc0003618-1510915933:7550..7840Clytia hemisphaericaexon
TCONS_00042711-exon-sc0003618-1575043694:7550..7840TCONS_00042711-exon-sc0003618-1575043694:7550..7840Clytia hemisphaericaexon
TCONS_00042711-exon-sc0003618-1491911889:8253..9078TCONS_00042711-exon-sc0003618-1491911889:8253..9078Clytia hemisphaericaexon
TCONS_00042711-exon-sc0003618-1510915933:8253..9078TCONS_00042711-exon-sc0003618-1510915933:8253..9078Clytia hemisphaericaexon
TCONS_00042711-exon-sc0003618-1575043694:8253..9078TCONS_00042711-exon-sc0003618-1575043694:8253..9078Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003618supercontigsc0003618:4934..9078 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0941039	0.0950246	0.0234123	0	0.344328	0.204203	1.00208	1.94782	7.00114	8.0657	6.18535	20.5584	0.872858	1.23054	5.15567	2.24364	7.17435	7.1934	0.306859	0.246805	0	0.0284625	0.0295484	0.186101	0.154606	0.0611621	0.142835	0.129999	0	0.29427
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR002172LDrepeatLR_classA_rpt
IPR013783Ig-like_fold
IPR023415LDLR_class-A_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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