|
|
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00042711-protein ID=TCONS_00042711-protein|Name=TCONS_00042711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=469bp
MTYALRSAIELRLEKGKESNYIIGKLFSVYILAAPRYAPKDVQLVGAGST
VAEIKWISVPQSDRPYLYNILIQDGTDDDQTKNIRTGFAAILISATLDGL
LPNREYTIKIRAVNVVGSGIYSDPLKFKTTRLDLPTLEMPKNASVTPILY
QESTSIKLSWSSPTDLKGNNPSLITYQVNYCSINKKCDKFTEKASKTTTL
LTNLQRSHIYQFTIRVFNENMESDDEKSTYTNIFKTVSKDTCRPNFFTCA
QSPQCVQQDRKCDGLINCSDRSDESEAAGCELPHFFGKISIKDVSYNTAI
LQFEPSRDPKQRIRGYEIENMVTKETQLIRHSTLSHERIIKVTFVGLKPL
THYEFRVRAVNPTGTGLWSPPSKTRTTAKPTPKPTTTDPRSGETTTSTRR
PKPTMEPAESSSGLSNNEKVGVAVAIILAVLLVIITVVIVTRDKSKNGKK
PEYTVKQGVSNPSYVEGEV Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR003961 | Fibronectin type III | SMART | SM00060 | FN3_2 | coord: 283..366
e-value: 1.6E-6
score: 37.7
coord: 36..119
e-value: 5.8E-5
score: 32.5
coord: 137..223
e-value: 8.6E-4
score: 28.6 |
| IPR003961 | Fibronectin type III | PFAM | PF00041 | fn3 | coord: 38..121
e-value: 2.4E-7
score: 30.9
coord: 140..220
e-value: 7.3E-8
score: 32.6
coord: 289..369
e-value: 8.0E-11
score: 42.1 |
| IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 38..133
score: 15.156 |
| IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 139..244
score: 13.681 |
| IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 285..380
score: 18.091 |
| IPR003961 | Fibronectin type III | CDD | cd00063 | FN3 | coord: 38..129
e-value: 1.29037E-9
score: 54.0395 |
| IPR003961 | Fibronectin type III | CDD | cd00063 | FN3 | coord: 287..375
e-value: 9.80564E-12
score: 60.2027 |
| IPR003961 | Fibronectin type III | CDD | cd00063 | FN3 | coord: 140..224
e-value: 1.56441E-6
score: 44.7947 |
| IPR003961 | Fibronectin type III | SUPERFAMILY | 49265 | Fibronectin type III | coord: 288..385 |
| IPR003961 | Fibronectin type III | SUPERFAMILY | 49265 | Fibronectin type III | coord: 38..223 |
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | SMART | SM00192 | LDLa_2 | coord: 241..282
e-value: 6.5E-9
score: 45.6 |
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | PFAM | PF00057 | Ldl_recept_a | coord: 241..278
e-value: 5.6E-7
score: 29.6 |
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | PROSITE | PS50068 | LDLRA_2 | coord: 241..281
score: 11.25 |
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | SUPERFAMILY | 57424 | LDL receptor-like module | coord: 241..276 |
| None | No IPR available | GENE3D | 4.10.400.10 | | coord: 236..283
e-value: 1.1E-8
score: 34.2 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 364..415 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 447..469 |
| None | No IPR available | CDD | cd00112 | LDLa | coord: 242..280
e-value: 4.95541E-8
score: 48.357 |
| IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 139..233
e-value: 6.2E-12
score: 45.3 |
| IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 284..389
e-value: 1.4E-15
score: 57.0 |
| IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 25..138
e-value: 2.5E-13
score: 49.5 |
| IPR023415 | Low-density lipoprotein (LDL) receptor class A, conserved site | PROSITE | PS01209 | LDLRA_1 | coord: 255..280 |
Blast
The following BLAST results are available for this feature:
|
