TCONS_00042695 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042695
Unique NameTCONS_00042695
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length537

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042695 ID=TCONS_00042695|Name=TCONS_00042695|organism=Clytia hemisphaerica|type=transcript|length=537bp
aagaTTTCTTAAAGTCTCGAAAAGTCAAGAACAGCGCCGAGTCTCGACCA
AAATTTATccgttcttataaaatagtgTGCGCTTTGAGAGTCTTTAAACa
agtattatttttatttttagggtGGAGTAGGACGCGTTGCCCAAGCTCCG
GTATGGGTTTTTAGCTTGGCCGATACGAGGTTTGTACCTGCCAAGGATAT
ATGGAAATTGTCCCAAGGAGGAATCGCGCTGTTTTGACTGGGGTGATCAA
TCGTGTCCTAAATGCCAACAGCACTATCCATAGCGACGAATGGAGGGCAT
ACATCAATCTCCCACAATTCGTTCCAAATTGCNNGGCATACATCAATCTC
CCACAATTCGTTCCAAATTGCATTGGCCATGACACGGTTAACCATACGTG
CCACTTTGTAGATCCTCAAACAGGGGCTCACACGCAGAATATATAGTCAT
ATTGGAACCGcttcaaattgaaaatcaagGCTATGAAAGGGATCAGGCGT
GTTGATCTTCAAAGTTACATGGACGAGTTCATGTGGa
Run BLAST on NCBI

transcript from alignment at sc0003610:8426..9198-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042695 ID=TCONS_00042695|Name=TCONS_00042695|organism=Clytia hemisphaerica|type=transcript|length=773bp|location=Sequence derived from alignment at sc0003610:8426..9198- (Clytia hemisphaerica)
AAGATTTCTTAAAGTCTCGAAAAGTCAAGAACAGCGCCGAGTCTCGACCA
AAATTTATCCGTTCTTATAAAATAGTGTGCGCTTTGAGAGTCTTTAAACA
AGTATTATTTTTATTTTTAGGGTGGAGTAGGACGCGTTGCCCAAGCTCCG
GTATGGGTTTTTAGCTTGGCCGATACGAGGTTTGTACCTGCCAAGGATAT
ATGGAAATTGTCCCAAGGAGGAATCGCGCTGTTTTGACTGGGGTGATCAA
TCGTGTCCTAAATGCCAACAGCACTATCCATAGCGACGAATGGAGGGCAT
ACATCAATCTCCCACAATTCGTTCCAAATTGCNNGGCATACATCAATCTC
CCACAATTCGTTCCAAATTGCATTGGCCATGACACGGTTAACCATACGTG
CCACTTTGTAGATCCTCAAACAGGGGCTCACACGCAGGTAAGCGATAATT
ACTACTCTTTAGAATTTGAAATATGTCTTCAAATTTCTCATATCTTTCTA
AACGGATCAAAAGTTACAGACCAACAAGCTAGAGATAAAATGGCAAAAAT
GGCTAAAATTGGGCAAAACGGGCCAGCTTTTTGGAGCTATAACTTTATTT
AAATCAGACAATCAAAGTATTAAAAAAAATATCAAGTTAAGATTATTTCG
TTAGAAACTTCTTATATTTTTAGAATATATAGTCATATTGGAACCGCTTC
AAATTGAAAATCAAGGCTATGAAAGGGATCAGGCGTGTTGATCTTCAAAG
TTACATGGACGAGTTCATGTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026506XLOC_026506Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042695-exon-sc0003610-1575043694:8762..9198TCONS_00042695-exon-sc0003610-1575043694:8762..9198Clytia hemisphaericaexon
TCONS_00042695-exon-sc0003610-1575043694:8426..8525TCONS_00042695-exon-sc0003610-1575043694:8426..8525Clytia hemisphaericaexon
TCONS_00042695-exon-sc0003610-1510915933:8762..9198TCONS_00042695-exon-sc0003610-1510915933:8762..9198Clytia hemisphaericaexon
TCONS_00042695-exon-sc0003610-1510915933:8426..8525TCONS_00042695-exon-sc0003610-1510915933:8426..8525Clytia hemisphaericaexon
TCONS_00042695-exon-sc0003610-1491911889:8762..9198TCONS_00042695-exon-sc0003610-1491911889:8762..9198Clytia hemisphaericaexon
TCONS_00042695-exon-sc0003610-1491911889:8426..8525TCONS_00042695-exon-sc0003610-1491911889:8426..8525Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003610supercontigsc0003610:8426..9198 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0379716	0	0	0.751618	0.560937	1.88717	1.87639	1.22827	0.918832	0.767091	0.504256	0.0785305	0	0.268858	0.503713	0.324793	0.39745	0	0	0.418316	0.612119	0.124019	0.563754	0.348392	0.778908	0.444942	0.516953	0	0.244631
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042695 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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