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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042686 ID=TCONS_00042686|Name=TCONS_00042686|organism=Clytia hemisphaerica|type=transcript|length=1079bp
TTTTAGGTGTGCCGTTCAGGTAGCACTGGGATTGGCGATATATGTCATGA
TAATACCAAGTATGTCCTTTTGCAGATAGGTTGTTAGAGACCCAGCGAAA
TTGgtcaaaacgtttttttattttcttttcattgagCTGCGACGAATAGA
TAACGTGTGCAGCTAGCTCCGGTGAACAGCCATTTCCAAAGAAGAAGATG
ATTAGTTGGAACGCCTGTCTATCACTGATGGGTTGAGCTCtgaaagctct
ttttatatGTTGTGGCCATGTGTCCATTGGGAAGAAGGCGTCTCCATTTA
TAGTGTTGACAATTGATTGTCTGTGTTGGCGTGAGAATGATCTTTGAATG
TATCGGTTTTTCATGTTGGTGTGGGCGTGTGAGTTTGCAAATGTAGGATA
GTCCATGCTATAATAAAGGAGATGGTGTTGTGACGTTAAGCGTTGATTTG
ATGAGGAATAAAAACTTCAGTGAGAGGAGTGAagtttttcagacttttta
tgtGTGTGGAATGTTTGTTCTGGTTGAAGGGTTGAAGTATGGAATGATTG
GTATAAAAGGCAAGATGCATGCTTTTTGGGAGCCAAAGCAATCTGAGCGA
TTTAGATATCGCCAACCCTTATGGTGTGATGAATTTCAGTGCTGAAAAAT
TGAATTAGAAAttgaattagaaatttttagaaCTTATGGTCAAACTTAGA
GAAATGTGGTGGTTTTAGTTTGAAGAAACGTGTTGGTTTTAGTTTGAAGA
AACGTGTTGAGCTTGAGATTCTGCATTAAGAGGAAATGTGGTGTCTTGTG
AGGTCTTAATATGTTCGGATGTGTTGGACATTAGTGTGTGTACAAAGTTT
CAAGATAATGCGAAGATGTTGGTTGGAACTATGTGAAAATATATTAGAGg
attaaaatattaaatatgGTAAAACGAGATTATAAAATGgtcagtagtta
gtattcataAATGTTTATAAAGATATTTGCGGGCTTCTTCATTAACTTTG
TTCTGTATTTCAACGGTTATGCCTCGTAATATGTGGTTTTTATAGCGGAG
CGTATTGTAGAAAGGATGTGGCCAGCAGG Run BLAST on NCBI protein sequence of TCONS_00042686-protein >TCONS_00042686-protein ID=TCONS_00042686-protein|Name=TCONS_00042686-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MDYPTFANSHAHTNMKNRYIQRSFSRQHRQSIVNTINGDAFFPMDTWPQH
IKRAFRAQPISDRQAFQLIIFFFGNGCSPELAAHVIYSSQLNEKKIKKRF
DQFRWVSNNLSAKGHTWYYHDIYRQSQCYLNGTPK Run BLAST on NCBI transcript from alignment at sc0003605:6302..7380 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042686 ID=TCONS_00042686|Name=TCONS_00042686|organism=Clytia hemisphaerica|type=transcript|length=1079bp|location=Sequence derived from alignment at sc0003605:6302..7380 (Clytia hemisphaerica)
CCTGCTGGCCACATCCTTTCTACAATACGCTCCGCTATAAAAACCACATA
TTACGAGGCATAACCGTTGAAATACAGAACAAAGTTAATGAAGAAGCCCG
CAAATATCTTTATAAACATTtatgaatactaactactgacCATTTTATAA
TCTCGTTTTACcatatttaatattttaatcCTCTAATATATTTTCACATA
GTTCCAACCAACATCTTCGCATTATCTTGAAACTTTGTACACACACTAAT
GTCCAACACATCCGAACATATTAAGACCTCACAAGACACCACATTTCCTC
TTAATGCAGAATCTCAAGCTCAACACGTTTCTTCAAACTAAAACCAACAC
GTTTCTTCAAACTAAAACCACCACATTTCTCTAAGTTTGACCATAAGttc
taaaaatttctaattcaaTTTCTAATTCAATTTTTCAGCACTGAAATTCA
TCACACCATAAGGGTTGGCGATATCTAAATCGCTCAGATTGCTTTGGCTC
CCAAAAAGCATGCATCTTGCCTTTTATACCAATCATTCCATACTTCAACC
CTTCAACCAGAACAAACATTCCACACacataaaaagtctgaaaaactTCA
CTCCTCTCACTGAAGTTTTTATTCCTCATCAAATCAACGCTTAACGTCAC
AACACCATCTCCTTTATTATAGCATGGACTATCCTACATTTGCAAACTCA
CACGCCCACACCAACATGAAAAACCGATACATTCAAAGATCATTCTCACG
CCAACACAGACAATCAATTGTCAACACTATAAATGGAGACGCCTTCTTCC
CAATGGACACATGGCCACAACatataaaaagagctttcaGAGCTCAACCC
ATCAGTGATAGACAGGCGTTCCAACTAATCATCTTCTTCTTTGGAAATGG
CTGTTCACCGGAGCTAGCTGCACACGTTATCTATTCGTCGCAGctcaatg
aaaagaaaataaaaaaacgttttgacCAATTTCGCTGGGTCTCTAACAAC
CTATCTGCAAAAGGACATACTTGGTATTATCATGACATATATCGCCAATC
CCAGTGCTACCTGAACGGCACACCTAAAA Coding sequence (CDS) from alignment at sc0003605:6302..7380 >TCONS_00042686 ID=TCONS_00042686|Name=TCONS_00042686|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0003605:6302..7380 (Clytia hemisphaerica)
ATGGACTATCCTACATTTGCAAACTCACACGCCCACACCAACATGAAAAA
CCGATACATTCAAAGATCATTCTCACGCCAACACAGACAATCAATTGTCA
ACACTATAAATGGAGACGCCTTCTTCCCAATGGACACATGGCCACAACat
ataaaaagagctttcaGAGCTCAACCCATCAGTGATAGACAGGCGTTCCA
ACTAATCATCTTCTTCTTTGGAAATGGCTGTTCACCGGAGCTAGCTGCAC
ACGTTATCTATTCGTCGCAGctcaatgaaaagaaaataaaaaaacgtttt
gacCAATTTCGCTGGGTCTCTAACAACCTATCTGCAAAAGGACATACTTG
GTATTATCATGACATATATCGCCAATCCCAGTGCTACCTGAACGGCACAC
CTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042686-exon-sc0003605-1491911889:6302..7380 | TCONS_00042686-exon-sc0003605-1491911889:6302..7380 | Clytia hemisphaerica | exon |
| TCONS_00042686-exon-sc0003605-1510915933:6302..7380 | TCONS_00042686-exon-sc0003605-1510915933:6302..7380 | Clytia hemisphaerica | exon |
| TCONS_00042686-exon-sc0003605-1575043694:6302..7380 | TCONS_00042686-exon-sc0003605-1575043694:6302..7380 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003605 | supercontig | sc0003605:6302..7380 . |
Blast
The following BLAST results are available for this feature:
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