TCONS_00042678 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042678
Unique NameTCONS_00042678
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042678 ID=TCONS_00042678|Name=TCONS_00042678|organism=Clytia hemisphaerica|type=transcript|length=303bp
GTGACATGAAACGGAAATAAGACATCCTAATTAAGATTTGGTTTGTAGTG
AATGTACGCTGCAAACTAAACTTGGAGATTACGAACGGTTCAAAACATAT
TATCTGTTAGCCATTAACTATATACAactaaatattttcataaatgaCTT
GAACTTGGTCCTTTGATTATTCAAAAGTATCCATGCTCGAGAAATCTATT
GAAATTCATTCTAGTCCTTGTCTAGCCACTGACTCTATCAAGTTGAAACA
ACAATCATTGTTGAGCTACTCAGGAGCCACAAGCATTTAATACAAATTCT
GCA
Run BLAST on NCBI

transcript from alignment at sc0003593:4647..4949

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042678 ID=TCONS_00042678|Name=TCONS_00042678|organism=Clytia hemisphaerica|type=transcript|length=303bp|location=Sequence derived from alignment at sc0003593:4647..4949 (Clytia hemisphaerica)
TGCAGAATTTGTATTAAATGCTTGTGGCTCCTGAGTAGCTCAACAATGAT
TGTTGTTTCAACTTGATAGAGTCAGTGGCTAGACAAGGACTAGAATGAAT
TTCAATAGATTTCTCGAGCATGGATACTTTTGAATAATCAAAGGACCAAG
TTCAAGtcatttatgaaaatatttagtTGTATATAGTTAATGGCTAACAG
ATAATATGTTTTGAACCGTTCGTAATCTCCAAGTTTAGTTTGCAGCGTAC
ATTCACTACAAACCAAATCTTAATTAGGATGTCTTATTTCCGTTTCATGT
CAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026491XLOC_026491Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042678-exon-sc0003593-1491911889:4647..4949TCONS_00042678-exon-sc0003593-1491911889:4647..4949Clytia hemisphaericaexon
TCONS_00042678-exon-sc0003593-1510915933:4647..4949TCONS_00042678-exon-sc0003593-1510915933:4647..4949Clytia hemisphaericaexon
TCONS_00042678-exon-sc0003593-1575043694:4647..4949TCONS_00042678-exon-sc0003593-1575043694:4647..4949Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003593supercontigsc0003593:4647..4949 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.32982	5.11651	0.955036	2.86526	2.10343	0.934265	1.19908	4.73184	0.735029	1.86322	1.23882	1.6149	0.31027	2.35724	0	0.763832	1.37423	0	0	0.289076	0	0.0080703	0.126262	0	2.42893	5.04873	1.36618	0.623814	1.294	1.23022
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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