TCONS_00042625 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042625
Unique NameTCONS_00042625
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042625 ID=TCONS_00042625|Name=TCONS_00042625|organism=Clytia hemisphaerica|type=transcript|length=1679bp
AGACAGTTTGTTTCGATCTAGCACAACAGTTGCCTGCGGGTACGAAATAG
GCTGGGAGTTCGTGGACAGCGTAATGACCagcaaacaaacaaacattttc
agGGTTTGTCAAGGTTGTCAAAAATAGGTACACAGACTACCAGTCTCCAT
GTGAATTTATGTCCAGGAACACTCTGATCAAGTGGCTTCAGCAATGGATC
TGGACTTTGTTCAAAAATGTCCGAGTTGTGGATCAGATCCAAAGTACCTG
GCCGCCGATGCCACAAAGATCGGAATTACATTTAAACAGATTAATGTGAC
GCCAATTGAGCAGCCTGTCGGAGATTCTTTTCCTACAAAAAGAAGGAGAT
ATGACCGAACCTTCATTAACAACCGCAACAGTAAATCAAGAATAGTCGTC
AACGAGGctctaaatttaatttcaagACATTTTTGTGGCAAAGTCAAGGC
CAGTAAAGAAGATTTAGAAGTAGCGAAAAAAACACTGATGAAATCAGAAA
TCCCTGTGGTGCGTTTAGTGACAGAAAAACTCTTTGAGTGTGATATCTCA
ACTCTCGAAAGAACATCATTGAGTAAATTAATAGTGATATTAACCAAAGA
TACAAGTTTAATTAATCTAATTCCAAAAAGATACCTACCTCAATTTGAAA
CTTTGAACACTTTATTGGCGTCGGTGAATGCAATCGAAGAGAACAGTGAT
CTGTGGCGAGTTGTAGAAGAATTCCATCGGTCTTCAAAGTTCTTCTTTCC
TGAGCTCGGTGATTGGCTGTTCATCGTAACATCGCTCTCCAAAGGATCTG
CACCTAAAACATACGGAGTTGAATTTCTGAGATATCTTTTTCTTCTAAGA
AAAGAGATAATGGATGATGACGTTCCCCCTGAAGATCCAAGATTAGTCAA
GAAATATAATCCTCCAAGAGACGGGAGAGCGTACTATTTTCATGATGGGG
ACCAGATTCGGGAAACGAGAAAGTTTAGCGCCGACAAAGACAACAAAAGG
TTGGACAACTTTGACGATCTTCCTGACAAAGACGtttgttcaaagatttt
tccaacTGCCAAAGGCAGATCCTATTTGTTTTTGTGGTTTTGCCCAGCAC
ACGGGCACTGTTACGGATATCATATAATTCCCCACGCAGAAGGCCGAAAG
GATGCTGCAGCGCCTCTATACGCTTTCTTGAAAAAGGCACcatatgaaat
tttttatgactttgCTTGTTCATTGGAGGAGTATGGTAGGAACAGGGAAA
GTGGTTTCTTCCAAGACACCCGCTTTTTCCACGATATCTTCCATGGATAT
GGACATAAATGTTCTGATGTGTTCAAGTCAAACAGATTGCTTGGATTCAA
CGGCTTGAACACATCCATTTGCGAGCAGTTTAACAGTTTTCTGCAGTGCA
TCAAGACATCAGGGAAACTGATGACACAGGAGCATTTCACCTTTTATGTC
CAATTTTTCATTTACCAATGGAATCTGGCTCGAAAAGACTCGTTTGCAAA
AAGAATTGCTGTTGCAATCGCCTGCACCAGATAAAGTTATTTTTATAGCT
ACATTCCTTGTAAAACAATTATTTTTATAGCTACATTCCTTGTATCCTTG
TAAAACAGTTATTTTTATAGCTACATTCATTGTAAAACAGTTATTTTTGA
ATCTActttaatgtcaaaaattttcgcgg
Run BLAST on NCBI

protein sequence of TCONS_00042625-protein

>TCONS_00042625-protein ID=TCONS_00042625-protein|Name=TCONS_00042625-protein|organism=Clytia hemisphaerica|type=polypeptide|length=446bp
MDLDFVQKCPSCGSDPKYLAADATKIGITFKQINVTPIEQPVGDSFPTKR
RRYDRTFINNRNSKSRIVVNEALNLISRHFCGKVKASKEDLEVAKKTLMK
SEIPVVRLVTEKLFECDISTLERTSLSKLIVILTKDTSLINLIPKRYLPQ
FETLNTLLASVNAIEENSDLWRVVEEFHRSSKFFFPELGDWLFIVTSLSK
GSAPKTYGVEFLRYLFLLRKEIMDDDVPPEDPRLVKKYNPPRDGRAYYFH
DGDQIRETRKFSADKDNKRLDNFDDLPDKDVCSKIFPTAKGRSYLFLWFC
PAHGHCYGYHIIPHAEGRKDAAAPLYAFLKKAPYEIFYDFACSLEEYGRN
RESGFFQDTRFFHDIFHGYGHKCSDVFKSNRLLGFNGLNTSICEQFNSFL
QCIKTSGKLMTQEHFTFYVQFFIYQWNLARKDSFAKRIAVAIACTR
Run BLAST on NCBI

transcript from alignment at sc0003545:5144..8459-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042625 ID=TCONS_00042625|Name=TCONS_00042625|organism=Clytia hemisphaerica|type=transcript|length=3316bp|location=Sequence derived from alignment at sc0003545:5144..8459- (Clytia hemisphaerica)
AGACAGTTTGTTTCGATCTAGCACAACAGTTGCCTGCGGGTACGAAATAG
GCTGGGAGTTCGTGGACAGCGTAATGACCAGCAAACAAACAAACATTTTC
AGGGTTTGTCAAGGTTGTCAAAAATAGGTACACAGACTACCAGTCTCCAT
GTGAATTTATGTCCAGGAACACTCTGATCAAGTGGCTTCAGCAATGGATC
TGGACTTTGTTCAAAAATGTCCGAGTTGTGGATCAGATCCAAAGTACCTG
GCCGCCGATGCCACAAAGATCGGAATTACATTTAAACAGATTAATGTGAC
GCCAATTGAGCAGCCTGTCGGAGATTCTTTTCCTACAAAAAGAAGGAGAT
ATGACCGAACCTTCATTAACAACCGCAACAGTAAATCAAGAATAGTCGTC
AACGAGGCTCTAAATTTAATTTCAAGACATTTTTGTGGCAAAGTCAAGGC
CAGTAAAGAAGATTTAGAAGTAGCGAAAAAAACACTGATGAAATCAGAAA
TCCCTGTGGTGCGTTTAGTGACAGAAAAACTCTTTGAGTGTGATATCTCA
ACTCTCGAAAGAACATCATTGAGTAAATTAATAGTGATATTAACCAAAGA
TACAAGTTTAATTAATCTAATTCCAAAAAGATACCTACCTCAATTTGAAA
CTTTGAACACTTTATTGGCGTCGGTGAATGCAATCGAAGAGAACAGTGAT
CTGTGGCGAGTTGTAGAAGAATTCCATCGGTCTTCAAAGTTCTTCTTTCC
TGAGCTCGGTGATTGGCTGTTCATCGTAACATCGCTCTCCAAAGGATCTG
CACCTAAAACATACGGAGTTGAATTTCTGAGATATCTTTTTCTTCTAAGA
AAAGAGATAATGGATGATGACGTTCCCCCTGANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGGCTTCAGCAATGGATCTGGACTTTGTTCA
AAAATGTCCGAGTTGTGGATCAGATCCAAAGTACCTGGCCGCCGATGCCA
CAAAGATCGGAATTACATTTAAGCAGATTAATGTGACGCCAATTGAGCAG
CCTGTCGGAGATTCTTTTCCTACAAAAAGAAGGAGATATGACCGAACCTT
CATTAACAACCGCAACAGTAAATCAAGAATAGTCGTCAACGAGGCTCTAA
ATTTAATTTCAAGACATTTTTGTGGCAAAGTCAAGGCCAGTAAAGAAGAT
TTAGAAGTAGCGAAAAAAACACTGATGAGATCAGAAATCCCTGTGGTGCG
TTTAGTGACAGAAAAACTCTTTGAGTGTGATATCTCAACTCTCGAAAGAA
CATCATTGAGTAAATTAATAGTGATATTAACCAAAGATACAAGTTTAATT
AATCTAATTCCAAAAAGATACCTACCTCAATTTGAAACTTTGAACACTTT
ATTGGCGTCGGTGAATGCAATCGAAGAGAACAGTGATCTGTGGCGAGTTG
TAGAAGAATTCCATCGGTCTTCAAAGTTCTTCTTTCCTGAGCTCGGTGAT
TGGCTGTTCATCGTAACATCTCTCTCCAAAGGATCTGCACCTAAAACATA
CGGAGTTGAATTTCTTAGATATCTTTTTCTTCTAAGAAAAGAGATAATGG
ATGATGAGGTTCCCCCTGAAGATCCAAGATTAGTCAAGAAATATAATCCT
CCAAGAGACGGGAGAGCGTACTATTTTCATGATGGGGACCAGATTCGGGA
AACGAGAAAGTTTAGCGCCGACAAAGACAACAAAAGGTTGGACAACTTTG
ACGATCTTCCTGACAAAGACGTTTGTTCAAAGATTTTTCCAACTGCCAAA
GGCAGATCCTATTTGTTTTTGTGGTTTTGCCCAGCACACGGGCACTGTTA
CGGATATCATATAATTCCCCACGCAGAAGGCCGAAAGGATGCTGCAGCGC
CTCTATACGCTTTCTTGAAAAAGGCACCATATGAAATTTTTTATGACTTT
GCTTGTTCATTGGAGGAGTATGGTAGGAACAGGGAAAGTGGTTTCTTCCA
AGACACCCGCTTTTTCCACGATATCTTCCATGGATATGGACATAAATGTT
CTGATGTGTTCAAGTCAAACAGATTGCTTGGATTCAACGGCTTGAACACA
TCCATTTGCGAGCAGTTTAACAGTTTTCTGCAGTGCATCAAGACATCAGG
GAAACTGATGACACAGGAGCATTTCACCTTTTATGTCCAATTTTTCATTT
ACCAATGGAATCTGGCTCGAAAAGACTCGTTTGCAAAAAGAATTGCTGTT
GCAATCGCCTGCACCAGATAAAGTTATTTTTATAGCTACATTCCTTGTAA
AACAATTATTTTTATAGCTACATTCCTTGTATCCTTGTAAAACAGTTATT
TTTATAGCTACATTCATTGTAAAACAGTTATTTTTGAATCTACTTTAATG
TCAAAAATTTTCGCGG

Coding sequence (CDS) from alignment at sc0003545:5144..8459-

>TCONS_00042625 ID=TCONS_00042625|Name=TCONS_00042625|organism=Clytia hemisphaerica|type=CDS|length=2682bp|location=Sequence derived from alignment at sc0003545:5144..8459- (Clytia hemisphaerica)
GTTCCCCCTGAAGATCCAAGATTAGTCAAGAAATATAATCCTCCAAGAGA
CGGGAGAGCGTACTATTTTCATGATGGGGACCAGATTCGGGAAACGAGAA
AGTTTAGCGCCGACAAAGACAACAAAAGGTTGGACAACTTTGACGATCTT
CCTGACAAAGACGTTTGTTCAAAGATTTTTCCAACTGCCAAAGGCAGATC
CTATTTGTTTTTGTGGTTTTGCCCAGCACACGGGCACTGTTACGGATATC
ATATAATTCCCCACGCAGAAGGCCGAAAGGATGCTGCAGCGCCTCTATAC
GCTTTCTTGAAAAAGGCACCATATGAAATTTTTTATGACTTTGCTTGTTC
ATTGGAGGAGTATGGTAGGAACAGGGAAAGTGGTTTCTTCCAAGACACCC
GCTTTTTCCACGATATCTTCCATGGATATGGACATAAATGTTCTGATGTG
TTCAAGTCAAACAGATTGCTTGGATTCAACGGCTTGAACACATCCATTTG
CGAGCAGTTTAACAGTTTTCTGCAGTGCATCAAGACATCAGGGAAACTGA
TGACACAGGAGCATTTCACCTTTTATGTCCAATTTTTCATTTACCAATGG
AATCTGGCTCGAAAAGACTCGTTTGCAAAAAGAATTGCTGTTGCAATCGC
CTGCACCAGATAAATGGATCTGGACTTTGTTCAAAAATGTCCGAGTTGTG
GATCAGATCCAAAGTACCTGGCCGCCGATGCCACAAAGATCGGAATTACA
TTTAAACAGATTAATGTGACGCCAATTGAGCAGCCTGTCGGAGATTCTTT
TCCTACAAAAAGAAGGAGATATGACCGAACCTTCATTAACAACCGCAACA
GTAAATCAAGAATAGTCGTCAACGAGGCTCTAAATTTAATTTCAAGACAT
TTTTGTGGCAAAGTCAAGGCCAGTAAAGAAGATTTAGAAGTAGCGAAAAA
AACACTGATGAAATCAGAAATCCCTGTGGTGCGTTTAGTGACAGAAAAAC
TCTTTGAGTGTGATATCTCAACTCTCGAAAGAACATCATTGAGTAAATTA
ATAGTGATATTAACCAAAGATACAAGTTTAATTAATCTAATTCCAAAAAG
ATACCTACCTCAATTTGAAACTTTGAACACTTTATTGGCGTCGGTGAATG
CAATCGAAGAGAACAGTGATCTGTGGCGAGTTGTAGAAGAATTCCATCGG
TCTTCAAAGTTCTTCTTTCCTGAGCTCGGTGATTGGCTGTTCATCGTAAC
ATCGCTCTCCAAAGGATCTGCACCTAAAACATACGGAGTTGAATTTCTGA
GATATCTTTTTCTTCTAAGAAAAGAGATAATGGATGATGACGTTCCCCCT
GAAGATCCAAGATTAGTCAAGAAATATAATCCTCCAAGAGACGGGAGAGC
GTACTATTTTCATGATGGGGACCAGATTCGGGAAACGAGAAAGTTTAGCG
CCGACAAAGACAACAAAAGGTTGGACAACTTTGACGATCTTCCTGACAAA
GACGTTTGTTCAAAGATTTTTCCAACTGCCAAAGGCAGATCCTATTTGTT
TTTGTGGTTTTGCCCAGCACACGGGCACTGTTACGGATATCATATAATTC
CCCACGCAGAAGGCCGAAAGGATGCTGCAGCGCCTCTATACGCTTTCTTG
AAAAAGGCACCATATGAAATTTTTTATGACTTTGCTTGTTCATTGGAGGA
GTATGGTAGGAACAGGGAAAGTGGTTTCTTCCAAGACACCCGCTTTTTCC
ACGATATCTTCCATGGATATGGACATAAATGTTCTGATGTGTTCAAGTCA
AACAGATTGCTTGGATTCAACGGCTTGAACACATCCATTTGCGAGCAGTT
TAACAGTTTTCTGCAGTGCATCAAGACATCAGGGAAACTGATGACACAGG
AGCATTTCACCTTTTATGTCCAATTTTTCATTTACCAATGGAATCTGGCT
CGAAAAGACTCGTTTGCAAAAAGAATTGCTGTTGCAATCGCCTGCACCAG
ATAAATGGATCTGGACTTTGTTCAAAAATGTCCGAGTTGTGGATCAGATC
CAAAGTACCTGGCCGCCGATGCCACAAAGATCGGAATTACATTTAAACAG
ATTAATGTGACGCCAATTGAGCAGCCTGTCGGAGATTCTTTTCCTACAAA
AAGAAGGAGATATGACCGAACCTTCATTAACAACCGCAACAGTAAATCAA
GAATAGTCGTCAACGAGGCTCTAAATTTAATTTCAAGACATTTTTGTGGC
AAAGTCAAGGCCAGTAAAGAAGATTTAGAAGTAGCGAAAAAAACACTGAT
GAAATCAGAAATCCCTGTGGTGCGTTTAGTGACAGAAAAACTCTTTGAGT
GTGATATCTCAACTCTCGAAAGAACATCATTGAGTAAATTAATAGTGATA
TTAACCAAAGATACAAGTTTAATTAATCTAATTCCAAAAAGATACCTACC
TCAATTTGAAACTTTGAACACTTTATTGGCGTCGGTGAATGCAATCGAAG
AGAACAGTGATCTGTGGCGAGTTGTAGAAGAATTCCATCGGTCTTCAAAG
TTCTTCTTTCCTGAGCTCGGTGATTGGCTGTTCATCGTAACATCGCTCTC
CAAAGGATCTGCACCTAAAACATACGGAGTTGAATTTCTGAGATATCTTT
TTCTTCTAAGAAAAGAGATAATGGATGATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026439XLOC_026439Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042625-proteinTCONS_00042625-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042625-exon-sc0003545-1575043694:7589..8459TCONS_00042625-exon-sc0003545-1575043694:7589..8459Clytia hemisphaericaexon
TCONS_00042625-exon-sc0003545-1575043694:5144..5951TCONS_00042625-exon-sc0003545-1575043694:5144..5951Clytia hemisphaericaexon
TCONS_00042625-exon-sc0003545-1510915933:7589..8459TCONS_00042625-exon-sc0003545-1510915933:7589..8459Clytia hemisphaericaexon
TCONS_00042625-exon-sc0003545-1510915933:5144..5951TCONS_00042625-exon-sc0003545-1510915933:5144..5951Clytia hemisphaericaexon
TCONS_00042625-exon-sc0003545-1491911889:7589..8459TCONS_00042625-exon-sc0003545-1491911889:7589..8459Clytia hemisphaericaexon
TCONS_00042625-exon-sc0003545-1491911889:5144..5951TCONS_00042625-exon-sc0003545-1491911889:5144..5951Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003545supercontigsc0003545:5144..8459 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0988333	0	0.139886	0.491834	2.69891	2.7345	3.73812	4.97089	2.86488	2.57123	3.11031	2.16814	1.8279	0.763205	0.730127	0.808134	1.36823	0.958031	0.701633	1.20474	1.76646	2.47554	0.283034	0.426412	0	0.0632603	0.753385	1.0207	0.446073	0.382101
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042625 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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