TCONS_00042599 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042599
Unique NameTCONS_00042599
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length896

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042599 ID=TCONS_00042599|Name=TCONS_00042599|organism=Clytia hemisphaerica|type=transcript|length=896bp
CAAGAGTAAAAAGTCAGTGTCGGTGAAGAGGATAAATTTCgtcggtttat
cggtgaaagAGCTATTTTTGCGCGGTTTATCGGTTTTTGGAAGCCTTACT
GGCGGGTGGCGTCGAAAGGCGAAACATAAGGCGGCTTTATTCCGAATTAT
CCGGGAAAAGCCGGTCGAATCACCCCGATTTTGGACGGacaaaaccactt
tcgttttcagtcaGAATCGAGAAAAAGATCACGTTTTTCACGTTTCTTCA
CAGAAAATCAGACAACAACAGTTCCACACATAGTCCACTTCTAATTTTGg
ttttggaaaagaaaaataatctcaCAAATTCTTGGGAAAGTAGAaaaacg
aATACATGTAATGTTTTGTCGTACAATCGTTAGCCATGTGCTACGCCAGA
CCACCAAAGCTTATCTCCCTGTTCAAGAGAGAGCTTTTCAGACTGGTTTA
CTGAGCTCTTTAAATGCTACGAAAACTGTCCATCAACAAGCAACAGGAGC
AAGTGTATCAGCTGAACACAAAGATGTCAAACATttgagaaaaacatttg
aaaaggtTGAACTGGAATGTCAAACTGACTTGGAGAATAAGAAATTATTT
GCTGTTGTACATATTTCAGGAAAACAGTTTAAAGTAGCGCATAATGATGT
TATTATGACTAATAATAAGATTGAGGCAGAATGTGGTGATACTATACGTT
TGGAAAAGGTACTAGCAGTTGGAGGACGAAATTTCACATTGCTCGGTCAA
CCCTTATTAAAACGTGATCTGGTGAACGTTGAAGCTATGGTGATGGAGAA
AACAAAAGGAGAAAAGAAAATCGCCTTCAAAAAGAAACGACGAAAGGGTT
ACAAACGTTGGAAGGGACATCGCCAGGACCTTtcagttttaaaaat
Run BLAST on NCBI

protein sequence of TCONS_00042599-protein

>TCONS_00042599-protein ID=TCONS_00042599-protein|Name=TCONS_00042599-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MFCRTIVSHVLRQTTKAYLPVQERAFQTGLLSSLNATKTVHQQATGASVS
AEHKDVKHLRKTFEKVELECQTDLENKKLFAVVHISGKQFKVAHNDVIMT
NNKIEAECGDTIRLEKVLAVGGRNFTLLGQPLLKRDLVNVEAMVMEKTKG
EKKIAFKKKRRKGYKRWKGHRQDLSVLK
Run BLAST on NCBI

transcript from alignment at sc0003526:1479..7572+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042599 ID=TCONS_00042599|Name=TCONS_00042599|organism=Clytia hemisphaerica|type=transcript|length=6094bp|location=Sequence derived from alignment at sc0003526:1479..7572+ (Clytia hemisphaerica)
CAAGAGTAAAAAGTCAGTGTCGGTGAAGAGGATAAATTTCgtcggtttat
cggtgaaagAGCTATTTTTGCGCGGTTTATCGGTTTTTGGAAGCCTTACT
GGCGGGTGGCGTCGAAAGGCGAAACATAAGGCGGCTTTATTCCGAATTAT
CCGGGAAAAGCCGGTCGAATCACCCCGATTTTGGACGGacaaaaccactt
tcgttttcagtcaGAATCGAGAAAAAGATCACGTTTTTCACGTTTCTTCA
CAGAAAATCAGACAACAACAGTTCCACACATAGTCCACTTCTAATTTTGg
ttttggaaaagaaaaataatctcaCAAATTCTTGGGAAAGTAGAGTAAGT
AATATATGCTTTAGTAGTTTGTTATTCAAACCTAAGACTAAAGAAGGTCT
AGGATTTAAATTGAACCAGATTGAATTGAAAGTATCCCTTGTCAGCACTT
TTCACCCATGCTGGAATTAGTGAACAgcacgccgaatatattcgaCGTGA
AGCAGTACTTTTGGCGTAAGGAGTGGATATAAAGTAAGATATTGACGTAT
gtcaaagcttttcaagacGAGAGGGAGCACCGCCATTCtaacaaaaactt
tgagaaattgcctaaaatttgagccatatatgaaataatttgagccaagc
caaccttgaaaactaatttgaagatcaacttcccaagaaaaggATCTACG
GGGGaagcggaacccacctagatccgcgcaccaccggataggctgtttcc
cggaaatttttgccggacctcaaataatcagtctgggaaatcctctcaat
tgcacgcttatgttccgagggcgtaagcgcgcaattgccaggttataatt
tacgcccgctcccgccccggttgaaattgcttagggatttcaaggggttc
agaattctctaattcaggcgaaggcatggtttaacgggcaaNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNgcttttgaaattcaacagagctttcggaa
ggaattgcgtgtcaGAATAATAAAGGGTTCTATTGCACGCTTACCGCTTA
CCacccgtttcagaacaatttcgataagcgtgtaattacacgctttaaaa
ttcagccattttgataaccgtgcaattgcgcgcttacagcctcggaacat
aagcgtgcaattgagaggatttcccagactgataatgacccatttacata
tgcggaatttttttttttttagcgtataaaccaggccttaaaaatcgaag
cgctgtctggggaattgaatgacaaattttggttggatgattttggctgc
tgcacgttttattttctttcaaactttcaagttttaattaattgtcttgc
gaacttgattcaggtaactctcatccttgttgtgcaaatacatcctgtag
atgactgatgttgttttttctgaaagctaaatttcctagtgtgactaact
attatcaagctagtatttcaatcgagtatatcgatttgtcatcgatcgtt
aatagattcgtcatcgatcgttaatcgatttgttatcgatcgtaaatcga
gtatgagtcgatagggccagacgatctcaatcgaacggaaccgacgatcg
aaccagtcgaacaaaatcgaacgcaatcgaccgaatgaaattcgattgtc
gaatgcaatcgaatctcaatcgaatattaccgcaattttcagattcgatt
gatattcgattgagattcgagaTTGAGATTGCCATTCTAGAAAATTTCTG
ttaatttttgttgaaattcatacattttcttctctcgccttggaaatttc
gaattttggtgaaaacttttgccctcggaaatcctgtgtcgtccgccccc
cctgttacagacaaaatctggaatggcccattgtaaggcggcaatcaaaa
atatcaaatccaGTCGACCAAACAGTGTAAATAAGCAAATAATAAGGAAA
TGTGAACTCTGTGTACGCTTTCATCCAAGTGAACTTCTTTCAAAATGTAC
CAGAATGTACAACCAGCACTGGTATAATACACataattaaattgaaaaaa
aaatgacataTTAACTCCCCCCTTTCTTCTTTTACCACCCCCTCACTTTC
AAAACCACCTCAAAAACTCTCTAACcctttatgaaatttttggaaCATTG
CTACCCCCTTTATTTAGGGGGAGTGTAAACTATGAAAAAGATGAATATTA
AAATAAGCATGGGATGACTTGGAATACTCCACTTCAGACTGATTAGAGAT
GATCACATCATGACAACAAATTGGACTGTTTGTTACTCACTATGTCAAga
aatatttgtcaaaaaacaaaattaacaaataaattttaaataccAGGTGA
TCGAAGGATTATATTCAGAAGAAGAACTGGTCAAGGCTAAATTTCATACT
CTTTTGACCAGTTACTTTTTGAGATatccaaatttttaattttttgactt
tgtcaaTTTCCCAGGTAATTTCTCAAAGAAAGACAAAAATCTATATTATT
TTTAAACaggtatacatgttttttttataagcataacgtttataaggaTA
CCAAGAcctgaatttgtctaaaaaataagcatattacaagcatattactg
agcttgcttttgaggtgtgtaagtgaaaattttaattaaaaagaatGCAA
GCGTCAACGCATATTGGTTCACAACTTTCCTGAACAATCTTTGTGTCTTA
TTTCCCTATCCTCATGTATAGCAATGACAgtgtttggaaaaattggagac
tcgaatttttcagaaaaataagcGGATCCAAATAAGCATATGATAAACAT
ACTTCGAGCCTGAGTCTAAAATATCTCTAAGTATAACTGAGcttgttttc
caaaaaacatatatgcttataaaaaaaaaacatgtattatctaaaatctt
gaaataaaacTGAAACGATCATGAAATACAAACAGATATTTGAGGTAAAA
AAATAGTGAAGTTTACAACAActttttttgcgagcataaacttttgcaat
AATCcaaacatgaaaatgaaaattttcacacaAAAAGCGAGCTAGCAGTC
TAGTTGAATATACCTTCTGCTTGATGTGATGTCATGTCGGGcaataaaaa
ctccagcttcaAACCAATTACACGTTAATGTATAATTATTTTAAGTGTGC
ACCAattttcttatcattgttttaacgctgttttaaattattcaacatga
catcgcTTTTTTTAGTTCcgaaaaaaagaacttttttcgtctctttttat
ccataaaatttaaaattagatCTTTCAAGCTGTATTATGTAAAGGAATTT
CACTGTTGaaatttgcattttgcaaatattttgtcattcaattcctgaaa
cagcgctttgatttttaaggccttgtctaaatgctaaagtaaaaataagt
caaGTAAATGATAGcactttcgcagcattaatctttgacaCACATTTTGG
CCAGTCTGCAGAGTATGGCAAAGCAGCACTCAAGGAATAATTTGGAAATA
CCAAGTTCCGCACTGTGGAAGGGTGCACCTGATAAANTTGCAGAGTATGG
CAAAGCAGCATTCAAGGAATAATTTGGAAATACCAAGTTCCGCACTGTGG
AAGGGTGCACCTGATGAATTTTGATCCAAACAAGGTGCACATACGCATAT
GGCTCAAAAAGGCAAAAGATTGCTAAAATTAGCTGCACTTGAGGAGAAAA
TAGCAGAATCTGCACTTGGGGTTAAAAACCGTTGGCacttacaccttaaa
acctcaaattttgcacctTGCACCCAGACGGCTGTGCATCCTCCAGGTGG
TGCACCCGTGTGTGGGGTCTTCCTGGATGAATGGCAatcataacagttag
cctaactcgtgaGGTCTGTTCACCCATATATACTATATTATATGTCACTN
AatcataacagttagcctaactcgtgaGGTCTGTTCACCCATATATACTA
TATTATATGTCACTCTATAAATAaccttgaaatttagaaaagcaGCAGCC
CTCATGGCCCAGTGGTATAGACTACATGTTTCGAACCAGGGTAGGGTATT
GAAAAGtctcaaaattttttctaaGTCTCTGTGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNACTGTTACACATGTACTAATTCTTTTTGGATATT
TCAAAGTGGCCACTGCATTTTATTGGCTTTCTACTAACAAATTTTGTCCT
CTTTGAAGTATTGaaccatttttctcaaaagtggTGATTTTTGCAACTCT
AGAAATTCATTTTCATACAAATTGATACTTTCAAACGTACTACTTTATAA
ATTGAGAAAACATTTTAGACATGTGACGGAATGCCAAAATTGCATAGTAT
AGTAATTGTTGATAATTGTTGAttaattctttgtttttttagaaaacgaA
TACATGTAATGTTTTGTCGTACAATCGTTAGCCATGTGCTACGCCAGACC
ACCAAAGCTTATCTCCCTGTTCAAGAGAGAGCTTTTCAGACTGGTTTACT
GAGCTCTTTAAATGCTACGAAAACTGTCCATCAACAAGCAACAGGAGCAA
GTGTATCAGCTGAACACAAAGATGTCAAACATttgagaaaaacatttgaa
aaggtTGAACTGGAATGTCAAACTGACTTGGAGAATAAGAAATTATTTGC
TGTTGTACATATTTCAGGAAAACAGTTTAAAGTAGCGCATAATGATGTTA
TTATGACTAATAATAAGATTGAGGCAGAATGTGGTGATACTATACGTTTG
GAAAAGGTACTAGCAGTTGGAGGACGAAATTTCACATTGCTCGGTCAACC
CTTATTAAAACGTGATCTGGTGAACGTTGAAGCTATGGTGATGGAGAAAA
CAAAAGGAGAAAAGAAAATCGCCTTCAAAAAGAAACGACGAAAGGGTTAC
AAACGTTGGAAGGGACATCGCCAGGACCTTtcagttttaaaaat

Coding sequence (CDS) from alignment at sc0003526:1479..7572+

>TCONS_00042599 ID=TCONS_00042599|Name=TCONS_00042599|organism=Clytia hemisphaerica|type=CDS|length=534bp|location=Sequence derived from alignment at sc0003526:1479..7572+ (Clytia hemisphaerica)
ATGTTTTGTCGTACAATCGTTAGCCATGTGCTACGCCAGACCACCAAAGC
TTATCTCCCTGTTCAAGAGAGAGCTTTTCAGACTGGTTTACTGAGCTCTT
TAAATGCTACGAAAACTGTCCATCAACAAGCAACAGGAGCAAGTGTATCA
GCTGAACACAAAGATGTCAAACATttgagaaaaacatttgaaaaggtTGA
ACTGGAATGTCAAACTGACTTGGAGAATAAGAAATTATTTGCTGTTGTAC
ATATTTCAGGAAAACAGTTTAAAGTAGCGCATAATGATGTTATTATGACT
AATAATAAGATTGAGGCAGAATGTGGTGATACTATACGTTTGGAAAAGGT
ACTAGCAGTTGGAGGACGAAATTTCACATTGCTCGGTCAACCCTTATTAA
AACGTGATCTGGTGAACGTTGAAGCTATGGTGATGGAGAAAACAAAAGGA
GAAAAGAAAATCGCCTTCAAAAAGAAACGACGAAAGGGTTACAAACGTTG
GAAGGGACATCGCCAGGACCTTtcagttttaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026415XLOC_026415Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042599-proteinTCONS_00042599-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042599-exon-sc0003526-1491911889:1479..1822TCONS_00042599-exon-sc0003526-1491911889:1479..1822Clytia hemisphaericaexon
TCONS_00042599-exon-sc0003526-1510915933:1479..1822TCONS_00042599-exon-sc0003526-1510915933:1479..1822Clytia hemisphaericaexon
TCONS_00042599-exon-sc0003526-1575043694:1479..1822TCONS_00042599-exon-sc0003526-1575043694:1479..1822Clytia hemisphaericaexon
TCONS_00042599-exon-sc0003526-1491911889:7021..7572TCONS_00042599-exon-sc0003526-1491911889:7021..7572Clytia hemisphaericaexon
TCONS_00042599-exon-sc0003526-1510915933:7021..7572TCONS_00042599-exon-sc0003526-1510915933:7021..7572Clytia hemisphaericaexon
TCONS_00042599-exon-sc0003526-1575043694:7021..7572TCONS_00042599-exon-sc0003526-1575043694:7021..7572Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003526supercontigsc0003526:1479..7572 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
83.3495	78.5091	27.423	18.0196	45.7545	32.964	33.4623	36.4238	30.7668	29.3773	24.6949	21.4268	14.528	16.0505	24.3094	26.2451	60.0503	48.5562	14.0534	12.9251	31.8553	29.298	81.593	71.0038	22.3444	28.9479	19.473	16.399	43.963	45.7841
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001787Ribosomal_L21
IPR028909L21p-like
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Blast
[Close]
BLAST of TCONS_00042599 vs. Swiss-Prot (Human)
Match: RM21 (39S ribosomal protein L21, mitochondrial OS=Homo sapiens GN=MRPL21 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.032e-21
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:  592 KLFAVVHISGKQFKVAHNDVIMTNNKIEAECGDTIRLEKVLAVGGRNFTLLGQPLLKRDLVNVEAMVME 798
            +LFAVVH + +Q+KV   D+I+  N+++  CG+ IRLEKVL VG  NFTLLG+PLL +DLV VEA V+E
Sbjct:   94 RLFAVVHFASRQWKVTSEDLILIGNELDLACGERIRLEKVLLVGADNFTLLGKPLLGKDLVRVEATVIE 162
The following BLAST results are available for this feature:
BLAST of TCONS_00042599 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM214.032e-2157.9739S ribosomal protein L21, mitochondrial OS=Homo s... [more]
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