TCONS_00042599-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00042599-protein
Unique NameTCONS_00042599-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length178

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00042599-protein ID=TCONS_00042599-protein|Name=TCONS_00042599-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MFCRTIVSHVLRQTTKAYLPVQERAFQTGLLSSLNATKTVHQQATGASVS
AEHKDVKHLRKTFEKVELECQTDLENKKLFAVVHISGKQFKVAHNDVIMT
NNKIEAECGDTIRLEKVLAVGGRNFTLLGQPLLKRDLVNVEAMVMEKTKG
EKKIAFKKKRRKGYKRWKGHRQDLSVLK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_026415XLOC_026415Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00042599TCONS_00042599Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001787Ribosomal_L21
IPR028909L21p-like
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001787Ribosomal protein L21TIGRFAMTIGR00061TIGR00061coord: 80..177
e-value: 2.5E-18
score: 64.3
IPR028909Ribosomal protein L21-likePFAMPF00829Ribosomal_L21pcoord: 80..178
e-value: 7.9E-31
score: 106.2
IPR028909Ribosomal protein L21-likeSUPERFAMILY141091L21p-likecoord: 79..178

Blast
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BLAST of TCONS_00042599-protein vs. Swiss-Prot (Human)
Match: RM21 (39S ribosomal protein L21, mitochondrial OS=Homo sapiens GN=MRPL21 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 9.223e-25
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 0 
Query:   78 KLFAVVHISGKQFKVAHNDVIMTNNKIEAECGDTIRLEKVLAVGGRNFTLLGQPLLKRDLVNVEAMVMEKTKGEKKI 154
            +LFAVVH + +Q+KV   D+I+  N+++  CG+ IRLEKVL VG  NFTLLG+PLL +DLV VEA V+EKT+   +I
Sbjct:   94 RLFAVVHFASRQWKVTSEDLILIGNELDLACGERIRLEKVLLVGADNFTLLGKPLLGKDLVRVEATVIEKTESWPRI 170
The following BLAST results are available for this feature:
BLAST of TCONS_00042599-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM219.223e-2555.8439S ribosomal protein L21, mitochondrial OS=Homo s... [more]
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