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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042598 ID=TCONS_00042598|Name=TCONS_00042598|organism=Clytia hemisphaerica|type=transcript|length=1058bp
ggccgataagatAATATGAATATCTTCCTTTCAGTCGAAAGAAAAAAGAT
CGCTCGAAAAACAGCATGATGATAGAGTCATCTTTTAGGAACAAAgtaat
tgccaccgcagggagcctAAGCTCCCGAGGATGGCATCCATAACCTTCAT
GCATAAGGAAGTtaggcaaacatctcataattttgtgCGCGTTTTTCAGT
AATTACGTTCCGCTTAACGGATAAGAATGCtatatcttacggtctctcta
ttgttttatcatcatcaaaaagacttttccggagttattttgatctgatt
actcattttgaaatctcaGTTTGNAAAGCTTAATGTCAAGACAAGCATCG
ATCTCAGTTGCAGGAAGCATTAATCCCATGCTTTGAACTACATCGTCACT
GATCTTTTCAGGGTCCAAAAGTGGGAGAATCTCTTCATTGATGTCGGAAA
TTTGGGCACAAGTGGAATCTAGCATAGACTTAAAGGATCTTAACTTTGCC
TCAGAAATGTCATCACCTTTAAGATACTTTTCGATATTCTCCATAGTGGA
TTTTAAGAAAGCTCTAAGGCCTTCTCTCCGCTTGAGTTTTCGATCCAGTG
TCATGGTGATATAAAAGACGGAAACTTCAAACAAAAGCCAAAGCCAAAGC
CAATTAAATCAGAGAAAgaaaagatttggaaattttccgaCGCGTGCCAA
TCAAggaaaggaaaatttcaacacCAAATCAAATtaccaaattaaataaa
aaatctcaaatacaGCTATCAACAGCTGATCTAAAAACGATGGGGAAact
ttaaacaatagaattccacCAATCCTcaccttttgaaagaaaaactctAG
CGAAACACAATCACAATAGCCAAGAGTAAATAGAAAGAGTGATTCACTAT
AGCAAAGCAGGAAACtttaaaattggacaaaaaacGAGAAAGTATAAGCA
AACTTCTCTAGccaaaaaatcaactttgaacAGAATTTCTtgagtgcaaa
aaatcaaaacaaaaaaatatctgtcaaaaaaaattgtcagtAAAATGTCC
AATAAAAN Run BLAST on NCBI protein sequence of TCONS_00042598-protein >TCONS_00042598-protein ID=TCONS_00042598-protein|Name=TCONS_00042598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MTLDRKLKRREGLRAFLKSTMENIEKYLKGDDISEAKLRSFKSMLDSTCA
QISDINEEILPLLDPEKISDDVVQSMGLMLPATEIDACLDIKLXKLRFQN
E Run BLAST on NCBI transcript from alignment at sc0003524:3747..4804 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042598 ID=TCONS_00042598|Name=TCONS_00042598|organism=Clytia hemisphaerica|type=transcript|length=1058bp|location=Sequence derived from alignment at sc0003524:3747..4804 (Clytia hemisphaerica)
NTTTTATTGGACATTTTactgacaattttttttgacagatatttttttgt
tttgattttttgcactcaAGAAATTCTgttcaaagttgattttttggCTA
GAGAAGTTTGCTTATACTTTCTCgttttttgtccaattttaaaGTTTCCT
GCTTTGCTATAGTGAATCACTCTTTCTATTTACTCTTGGCTATTGTGATT
GTGTTTCGCTagagtttttctttcaaaaggtgAGGATTGgtggaattcta
ttgtttaaagtTTCCCCATCGTTTTTAGATCAGCTGTTGATAGCtgtatt
tgagattttttatttaatttggtaATTTGATTTGgtgttgaaattttcct
ttccTTGATTGGCACGCGtcggaaaatttccaaatcttttcTTTCTCTGA
TTTAATTGGCTTTGGCTTTGGCTTTTGTTTGAAGTTTCCGTCTTTTATAT
CACCATGACACTGGATCGAAAACTCAAGCGGAGAGAAGGCCTTAGAGCTT
TCTTAAAATCCACTATGGAGAATATCGAAAAGTATCTTAAAGGTGATGAC
ATTTCTGAGGCAAAGTTAAGATCCTTTAAGTCTATGCTAGATTCCACTTG
TGCCCAAATTTCCGACATCAATGAAGAGATTCTCCCACTTTTGGACCCTG
AAAAGATCAGTGACGATGTAGTTCAAAGCATGGGATTAATGCTTCCTGCA
ACTGAGATCGATGCTTGTCTTGACATTAAGCTTTNCAAACtgagatttca
aaatgagtaatcagatcaaaataactccggaaaagtctttttgatgatga
taaaacaatagagagaccgtaagatataGCATTCTTATCCGTTAAGCGGA
ACGTAATTACTGAAAAACGCGcacaaaattatgagatgtttgcctaACTT
CCTTATGCATGAAGGTTATGGATGCCATCCTCGGGAGCTTaggctccctg
cggtggcaattacTTTGTTCCTAAAAGATGACTCTATCATCATGCTGTTT
TTCGAGCGATCTTTTTTCTTTCGACTGAAAGGAAGATATTCATATTatct
tatcggcc Coding sequence (CDS) from alignment at sc0003524:3747..4804 >TCONS_00042598 ID=TCONS_00042598|Name=TCONS_00042598|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0003524:3747..4804 (Clytia hemisphaerica)
ATGACACTGGATCGAAAACTCAAGCGGAGAGAAGGCCTTAGAGCTTTCTT
AAAATCCACTATGGAGAATATCGAAAAGTATCTTAAAGGTGATGACATTT
CTGAGGCAAAGTTAAGATCCTTTAAGTCTATGCTAGATTCCACTTGTGCC
CAAATTTCCGACATCAATGAAGAGATTCTCCCACTTTTGGACCCTGAAAA
GATCAGTGACGATGTAGTTCAAAGCATGGGATTAATGCTTCCTGCAACTG
AGATCGATGCTTGTCTTGACATTAAGCTTTNCAAACtgagatttcaaaat
gagtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042598-exon-sc0003524-1491911889:3747..4804 | TCONS_00042598-exon-sc0003524-1491911889:3747..4804 | Clytia hemisphaerica | exon |
| TCONS_00042598-exon-sc0003524-1510915933:3747..4804 | TCONS_00042598-exon-sc0003524-1510915933:3747..4804 | Clytia hemisphaerica | exon |
| TCONS_00042598-exon-sc0003524-1575043694:3747..4804 | TCONS_00042598-exon-sc0003524-1575043694:3747..4804 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003524 | supercontig | sc0003524:3747..4804 . |
Blast
The following BLAST results are available for this feature:
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