TCONS_00042591 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042591
Unique NameTCONS_00042591
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length619

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042591 ID=TCONS_00042591|Name=TCONS_00042591|organism=Clytia hemisphaerica|type=transcript|length=619bp
TGCTCTGATTCTTCATTCTCTTCAGATACGTCACTCAAGTCATCAGAGGA
ATCATCGTTATTAGCACGAAAGTTTGGATCATTAAATGGCTTCATTCGGT
TGACATGGACCACAGTCGTTGGTTTTCTTTTATTGAGGGGATCATTCAGC
TCATAATTTACTTCGGATATCTTTTTCGTGACTCGATATGGACCAATCCA
CTTTGCCATCAATTTTGGACTCAGGCCCTTATAACGTTTTTTATTGTGTA
GCCAGACCTTATCTCCGACTTTGAACTGAGTGTTAGTGGCCCCTCTGTCG
TAGTAGTACTTGTCTCGTCGTTGGGCTTTTCGTAGGTTCACTTGTGCTAG
CTTCTGAGCAGTACGCACTTGATCAACTATCTTTTCACGATGATCCTCAA
TTAACGGTGTTAATTTTCGTCCAGGATTGAACTGTAGGTCACTTGGTAGC
GTAGCTTCTCTTCCAAACATTAAGTAGTATGGCGAATCCTGTCTGGATGC
ATTGATACTTGTACGGTAAGCGAAGAGTACTGAGGGAAGATACTGGTCCC
AATCATTCTGTCTTGAAGCAACAAAGTGGGAAATGCCTTTAACAATGGTT
CCATTAAGTCTTTCTACAA
Run BLAST on NCBI

protein sequence of TCONS_00042591-protein

>TCONS_00042591-protein ID=TCONS_00042591-protein|Name=TCONS_00042591-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
VERLNGTIVKGISHFVASRQNDWDQYLPSVLFAYRTSINASRQDSPYYLM
FGREATLPSDLQFNPGRKLTPLIEDHREKIVDQVRTAQKLAQVNLRKAQR
RDKYYYDRGATNTQFKVGDKVWLHNKKRYKGLSPKLMAKWIGPYRVTKKI
SEVNYELNDPLNKRKPTTVVHVNRMKPFNDPNFRANNDDSSDDLSDVSEE
NEESE
Run BLAST on NCBI

transcript from alignment at sc0003513:6991..7609

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042591 ID=TCONS_00042591|Name=TCONS_00042591|organism=Clytia hemisphaerica|type=transcript|length=619bp|location=Sequence derived from alignment at sc0003513:6991..7609 (Clytia hemisphaerica)
TTGTAGAAAGACTTAATGGAACCATTGTTAAAGGCATTTCCCACTTTGTT
GCTTCAAGACAGAATGATTGGGACCAGTATCTTCCCTCAGTACTCTTCGC
TTACCGTACAAGTATCAATGCATCCAGACAGGATTCGCCATACTACTTAA
TGTTTGGAAGAGAAGCTACGCTACCAAGTGACCTACAGTTCAATCCTGGA
CGAAAATTAACACCGTTAATTGAGGATCATCGTGAAAAGATAGTTGATCA
AGTGCGTACTGCTCAGAAGCTAGCACAAGTGAACCTACGAAAAGCCCAAC
GACGAGACAAGTACTACTACGACAGAGGGGCCACTAACACTCAGTTCAAA
GTCGGAGATAAGGTCTGGCTACACAATAAAAAACGTTATAAGGGCCTGAG
TCCAAAATTGATGGCAAAGTGGATTGGTCCATATCGAGTCACGAAAAAGA
TATCCGAAGTAAATTATGAGCTGAATGATCCCCTCAATAAAAGAAAACCA
ACGACTGTGGTCCATGTCAACCGAATGAAGCCATTTAATGATCCAAACTT
TCGTGCTAATAACGATGATTCCTCTGATGACTTGAGTGACGTATCTGAAG
AGAATGAAGAATCAGAGCA

Coding sequence (CDS) from alignment at sc0003513:6991..7609

>TCONS_00042591 ID=TCONS_00042591|Name=TCONS_00042591|organism=Clytia hemisphaerica|type=CDS|length=615bp|location=Sequence derived from alignment at sc0003513:6991..7609 (Clytia hemisphaerica)
GTAGAAAGACTTAATGGAACCATTGTTAAAGGCATTTCCCACTTTGTTGC
TTCAAGACAGAATGATTGGGACCAGTATCTTCCCTCAGTACTCTTCGCTT
ACCGTACAAGTATCAATGCATCCAGACAGGATTCGCCATACTACTTAATG
TTTGGAAGAGAAGCTACGCTACCAAGTGACCTACAGTTCAATCCTGGACG
AAAATTAACACCGTTAATTGAGGATCATCGTGAAAAGATAGTTGATCAAG
TGCGTACTGCTCAGAAGCTAGCACAAGTGAACCTACGAAAAGCCCAACGA
CGAGACAAGTACTACTACGACAGAGGGGCCACTAACACTCAGTTCAAAGT
CGGAGATAAGGTCTGGCTACACAATAAAAAACGTTATAAGGGCCTGAGTC
CAAAATTGATGGCAAAGTGGATTGGTCCATATCGAGTCACGAAAAAGATA
TCCGAAGTAAATTATGAGCTGAATGATCCCCTCAATAAAAGAAAACCAAC
GACTGTGGTCCATGTCAACCGAATGAAGCCATTTAATGATCCAAACTTTC
GTGCTAATAACGATGATTCCTCTGATGACTTGAGTGACGTATCTGAAGAG
AATGAAGAATCAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026407XLOC_026407Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042591-proteinTCONS_00042591-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042591-exon-sc0003513-1491911889:6991..7609TCONS_00042591-exon-sc0003513-1491911889:6991..7609Clytia hemisphaericaexon
TCONS_00042591-exon-sc0003513-1510915933:6991..7609TCONS_00042591-exon-sc0003513-1510915933:6991..7609Clytia hemisphaericaexon
TCONS_00042591-exon-sc0003513-1575043694:6991..7609TCONS_00042591-exon-sc0003513-1575043694:6991..7609Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003513supercontigsc0003513:6991..7609 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0865311	0.421907	0.783799	0.479266	1.28361	0.829904	0.395621	0.238696	0.145836	0.270962	1.31501	0.518663	2.70481	3.64568	0.638758	0.790944	0.0649586	0.199741	5.43012	4.86641	0.585642	0.367272	0.0992148	0	1.73473	0.621308	0.474605	0.379884	0.192086	0.293557
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042591 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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