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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042586 ID=TCONS_00042586|Name=TCONS_00042586|organism=Clytia hemisphaerica|type=transcript|length=1039bp
CTCACCAGCCCAGCAACGGTTAGAAAAAGAGGAAGAACATTCCCATAAAG
AAATGCATAGGGAACGACGTCACCACCGTCATCATCAAAGAcattgcttt
aaaacgcctaatgaagggaaaacattcgaaactgtAACAGAAGAACCTGC
TACGAGGGATCTCTTCATGTACGTTCATACTGGAAAGAAAAGAAGCCACG
TCCATAAGACCAAACGACACCATGGACATGTACTGGCAATACATTGCCGA
TCAACTGACCAAGAAGAGCAAAAACATGGCATCAAGACAGAAGTCTATTT
ATCCATAGAAGGAGAAACAAAGACCTTTATTGCTCTGGTGGACACTGGTT
CTAGTCATTCCTTATTGAACAAAAGAATTTGGGATAAGGCTGAAATCGCT
CCATTCCTGACCCACAATGAAGGGACTGTATTAGCATCAGTTACTGGAGG
TATCCTTGAGACTGCTGGAAGTGCAATCATACCAGCTAGCATAGCAGACC
CACTGTCATTGAAAACCCAGGAATTTATGGTtgtcccaaacattgaagaa
gatGTAATCATTGGAATGAATATTTTGAGCTCGGAGAAGGCTATCATCAA
CTTTTCAGAACAAACCATAACCAGTGCGAGCAGGAGAAAGAGATTCTTTG
CGAATAACAAACGAAAAGAAACACCCAGATTTTGGAGTATCCTAGCAGTT
ATAGCCGCTATTACTGCATTGACGGTTGCGACCCTGTACGTTCTCACTTT
GATCAAGAATCCATCAGACGAAGAATATTTACCAAATGGAAATCTCACAA
GTAAATTTGTCAAGATACCAACTATTTTGCATGTTCGAGCTGGAAAAGTG
TTATCAGAGCGAACAAAACATATTGTGGTTATCGAATTTCCGGTACCAAG
GATTCTAAACCAATACATATCTAATTCCGAAAGAATGATCCTTGGTATCA
TGCATAATACATCAAAATCCAATGGTACAACCGAATACCAGAGATTGAAT
GCTAAATGTCGAATTCGAACCCTACATGAATAATGAAAG Run BLAST on NCBI protein sequence of TCONS_00042586-protein >TCONS_00042586-protein ID=TCONS_00042586-protein|Name=TCONS_00042586-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
SPAQQRLEKEEEHSHKEMHRERRHHRHHQRHCFKTPNEGKTFETVTEEPA
TRDLFMYVHTGKKRSHVHKTKRHHGHVLAIHCRSTDQEEQKHGIKTEVYL
SIEGETKTFIALVDTGSSHSLLNKRIWDKAEIAPFLTHNEGTVLASVTGG
ILETAGSAIIPASIADPLSLKTQEFMVVPNIEEDVIIGMNILSSEKAIIN
FSEQTITSASRRKRFFANNKRKETPRFWSILAVIAAITALTVATLYVLTL
IKNPSDEEYLPNGNLTSKFVKIPTILHVRAGKVLSERTKHIVVIEFPVPR
ILNQYISNSERMILGIMHNTSKSNGTTEYQRLNAKCRIRTLHE Run BLAST on NCBI transcript from alignment at sc0003513:9110..10869+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042586 ID=TCONS_00042586|Name=TCONS_00042586|organism=Clytia hemisphaerica|type=transcript|length=1760bp|location=Sequence derived from alignment at sc0003513:9110..10869+ (Clytia hemisphaerica)
CTCACCAGCCCAGCAACGGTTAGAAAAAGAGGAAGAACATTCCCATAAAG
AAATGCATAGGGAACGACGTCACCACCGTCATCATCAAAGAcattgcttt
aaaacgcctaatgaagggaaaacattcgaaactgtAACAGAAGAACCTGC
TACGAGGGATCTCTTCATGTACGTTCATACTGGAAAGAAAAGAAGCCACG
TCCATAAGACCAAACGACACCATGGACATGTACTGGCAATACATTGCCGA
TCAACTGACCAAGAAGAGCAAAAACATGGCATCAAGACAGAAGTCTATTT
ATCCATAGAAGGAGAAACAAAGACCTTTATTGCTCTGGTGGACACTGGTT
CTAGTCATTCCTTATTGAACAAAAGAATTTGGGATAAGGCTGAAATCGCT
CCATTTCTGACCCACAATGAAGGGACTATATTAGCATAATCTACTGGAGG
TGTCCTTGAGACTGCTGGAAGTGCAATCATACCAGCTAGCATAGCAGACC
CACTGTCATTGAAAACCCAGGAATTTATGGTtgtcccaaacattgaagaa
gatGTAATCATTGGAATGAATATTTTGAGCTCGGAGAAGGCTATCATCAA
CTTTTCAGAACAAACCATAACCAGTGCGAGCAGGAGAAAGAGATTCTTTG
CGAGTAACAAACGAAAAGAAACACCCAGATTTTGGAGTATCCTAGCAGTT
ATAGCCGCTATTACTGCATTGACGGTTGCGATCCTGTACGTTCTCACTTT
GATCAAGAATCCATCAAACGAAGAATATTTACCAACTGGAAATCTCACAA
GTAAATTTGTCAAGATACCAACTATTTTGCATGTTCGAGCTGGAAAAGTG
TTATCAGAGCGAACAAAACATATTGTGGNGTCTCTTCACGTACGTTCATA
CTGGAAAGAAAAGAAGCCACGTCCATAAGACCAAACGACTACATGGACAT
GTACTGGCAATATATTGCCGATCAACTGACCAAGAAGAGCAAAAACATGG
CATCAAGACAGAAGTCTATTTATCCATAGAAGGAGAAACAAAGACCTTTA
TTGCTCTGGTGGACACTAGTTCTAGTCATTCCTTATTGAACAAAAGAATT
TGGGATAAGGCTGAAATCGCTCCATTCCTGACCCACAATGAAGGGACTGT
ATTAGCATCAGTTACTGGAGGTATCCTTGAGACTGCTGGAAGTGCAATCA
TACCAGCTAGCATAGCAGACCCACTGTCATTGAAAACCCAGGAATTTATG
GTtgtcccaaacattgaagaagatGTAATCATTGGAATGAATATTTTGAG
CTCGGAGAAGGCTATCATCAACTTTTCAGAACAAACCATAACCAGTGCGA
GCAGGAGAAAGAGATTCTTTGCGAATAACAAACGAAAAGAAACACCCAGA
TTTTGGAGTATCCTAGCAGTTATAGCCGCTATTACTGCATTGACGGTTGC
GACCCTGTACGTTCTCACTTTGATCAAGAATCCATCAGACGAAGAATATT
TACCAAATGGAAATCTCACAAGTAAATTTGTCAAGATACCAACTATTTTG
CATGTTCGAGCTGGAAAAGTGTTATCAGAGCGAACAAAACATATTGTGGT
TATCGAATTTCCGGTACCAAGGATTCTAAACCAATACATATCTAATTCCG
AAAGAATGATCCTTGGTATCATGCATAATACATCAAAATCCAATGGTACA
ACCGAATACCAGAGATTGAATGCTAAATGTCGAATTCGAACCCTACATGA
ATAATGAAAG Coding sequence (CDS) from alignment at sc0003513:9110..10869+ >TCONS_00042586 ID=TCONS_00042586|Name=TCONS_00042586|organism=Clytia hemisphaerica|type=CDS|length=2064bp|location=Sequence derived from alignment at sc0003513:9110..10869+ (Clytia hemisphaerica)
TCACCAGCCCAGCAACGGTTAGAAAAAGAGGAAGAACATTCCCATAAAGA
AATGCATAGGGAACGACGTCACCACCGTCATCATCAAAGAcattgcttta
aaacgcctaatgaagggaaaacattcgaaactgtAACAGAAGAACCTGCT
ACGAGGGATCTCTTCATGTACGTTCATACTGGAAAGAAAAGAAGCCACGT
CCATAAGACCAAACGACACCATGGACATGTACTGGCAATACATTGCCGAT
CAACTGACCAAGAAGAGCAAAAACATGGCATCAAGACAGAAGTCTATTTA
TCCATAGAAGGAGAAACAAAGACCTTTATTGCTCTGGTGGACACTGGTTC
TAGTCATTCCTTATTGAACAAAAGAATTTGGGATAAGGCTGAAATCGCTC
CATTCCTGACCCACAATGAAGGGACTGTATTAGCATCAGTTACTGGAGGT
ATCCTTGAGACTGCTGGAAGTGCAATCATACCAGCTAGCATAGCAGACCC
ACTGTCATTGAAAACCCAGGAATTTATGGTtgtcccaaacattgaagaag
atGTAATCATTGGAATGAATATTTTGAGCTCGGAGAAGGCTATCATCAAC
TTTTCAGAACAAACCATAACCAGTGCGAGCAGGAGAAAGAGATTCTTTGC
GAATAACAAACGAAAAGAAACACCCAGATTTTGGAGTATCCTAGCAGTTA
TAGCCGCTATTACTGCATTGACGGTTGCGACCCTGTACGTTCTCACTTTG
ATCAAGAATCCATCAGACGAAGAATATTTACCAAATGGAAATCTCACAAG
TAAATTTGTCAAGATACCAACTATTTTGCATGTTCGAGCTGGAAAAGTGT
TATCAGAGCGAACAAAACATATTGTGGTTATCGAATTTCCGGTACCAAGG
ATTCTAAACCAATACATATCTAATTCCGAAAGAATGATCCTTGGTATCAT
GCATAATACATCAAAATCCAATGGTACAACCGAATACCAGAGATTGAATG
CTAAATGTCGAATTCGAACCCTACATGAATAATCACCAGCCCAGCAACGG
TTAGAAAAAGAGGAAGAACATTCCCATAAAGAAATGCATAGGGAACGACG
TCACCACCGTCATCATCAAAGAcattgctttaaaacgcctaatgaaggga
aaacattcgaaactgtAACAGAAGAACCTGCTACGAGGGATCTCTTCATG
TACGTTCATACTGGAAAGAAAAGAAGCCACGTCCATAAGACCAAACGACA
CCATGGACATGTACTGGCAATACATTGCCGATCAACTGACCAAGAAGAGC
AAAAACATGGCATCAAGACAGAAGTCTATTTATCCATAGAAGGAGAAACA
AAGACCTTTATTGCTCTGGTGGACACTGGTTCTAGTCATTCCTTATTGAA
CAAAAGAATTTGGGATAAGGCTGAAATCGCTCCATTCCTGACCCACAATG
AAGGGACTGTATTAGCATCAGTTACTGGAGGTATCCTTGAGACTGCTGGA
AGTGCAATCATACCAGCTAGCATAGCAGACCCACTGTCATTGAAAACCCA
GGAATTTATGGTtgtcccaaacattgaagaagatGTAATCATTGGAATGA
ATATTTTGAGCTCGGAGAAGGCTATCATCAACTTTTCAGAACAAACCATA
ACCAGTGCGAGCAGGAGAAAGAGATTCTTTGCGAATAACAAACGAAAAGA
AACACCCAGATTTTGGAGTATCCTAGCAGTTATAGCCGCTATTACTGCAT
TGACGGTTGCGACCCTGTACGTTCTCACTTTGATCAAGAATCCATCAGAC
GAAGAATATTTACCAAATGGAAATCTCACAAGTAAATTTGTCAAGATACC
AACTATTTTGCATGTTCGAGCTGGAAAAGTGTTATCAGAGCGAACAAAAC
ATATTGTGGTTATCGAATTTCCGGTACCAAGGATTCTAAACCAATACATA
TCTAATTCCGAAAGAATGATCCTTGGTATCATGCATAATACATCAAAATC
CAATGGTACAACCGAATACCAGAGATTGAATGCTAAATGTCGAATTCGAA
CCCTACATGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042586-exon-sc0003513-1491911889:9110..9497 | TCONS_00042586-exon-sc0003513-1491911889:9110..9497 | Clytia hemisphaerica | exon |
| TCONS_00042586-exon-sc0003513-1510915933:9110..9497 | TCONS_00042586-exon-sc0003513-1510915933:9110..9497 | Clytia hemisphaerica | exon |
| TCONS_00042586-exon-sc0003513-1575043694:9110..9497 | TCONS_00042586-exon-sc0003513-1575043694:9110..9497 | Clytia hemisphaerica | exon |
| TCONS_00042586-exon-sc0003513-1491911889:10219..10869 | TCONS_00042586-exon-sc0003513-1491911889:10219..10869 | Clytia hemisphaerica | exon |
| TCONS_00042586-exon-sc0003513-1510915933:10219..10869 | TCONS_00042586-exon-sc0003513-1510915933:10219..10869 | Clytia hemisphaerica | exon |
| TCONS_00042586-exon-sc0003513-1575043694:10219..10869 | TCONS_00042586-exon-sc0003513-1575043694:10219..10869 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003513 | supercontig | sc0003513:9110..10869 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021109 | Peptidase_aspartic_dom |
| IPR001969 | Aspartic_peptidase_AS |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004190 | aspartic-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004190 |
aspartic-type endopeptidase activity |
Blast
The following BLAST results are available for this feature:
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