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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042581 ID=TCONS_00042581|Name=TCONS_00042581|organism=Clytia hemisphaerica|type=transcript|length=1553bp
attttatcaggctggggggaccttgttcttaggggggacctaaatttggc
ggggggacctagaaccccagtcggagccatgcTATTGGTGGGATTCGGGT
CTTGTaggttttcagttttttagacAGGCCGTAACACACACGAGAATATC
TGTCCATAGTgtggaaaattgatttcaacACAGCAATCAGGTTGTTCTGT
GTCTTAATATGGTTATTTTGGTATATAAATTATTACTAGTACCTAGAATT
GAGTGCTAAATCGGGTTGCTAAAAAATACGGCAAAgttggacatgccgta
actcaccCGAGGCAGGTGGTATGTCATTAATCAATTCTATCTAACGTCAT
AATTGATTTAGTCTTTATTTATTAGATATGACTAGCTCATGTATTTCCAT
CATCGCTAGTGCCTCCTAGACTATAAGCCCGTAAAGTTCAAGAAACCATG
TAATCTAGAACGTTTTTCCAAACCAGACCAATTTAAATAAGTATTACCTT
GTAGTTCTAAGCTATTATCGATCTTGAAGCTTTCAGAGTCACTTTCAGTA
TCACTTATAAGAACAACATCGGGCACATCACTTTTGATACAATCACAGTC
CACTGTCTTGATAAGTTTGCGCTTTTCAGAatgtctgaaaaatgaaaatg
tgaaTCGATTGAACTTATTACTGTATtgcacgcattataaacgactctag
TCTAGTGAAACTAAATTTGTAAGTTTCCCAGGGGGATACCTAGGCAAATG
GAGGATACAGGTagccttttttggacctacaaattcccgctaagggtcgt
aaaaaccaCAATATCTAGTTTTACTCCCCTTAAGGGTTACAAAATTCACA
AATGTTCGtcttttcccctcaattttagACCCTGAAAGTTGAGATTTTCA
AAAGTAGGGCGGCACATATACCCGTCATCCCGCAAACCTAGTACTCACCC
CGGGGGAGTTTCCTTTCAAAATATctgattttctttcaaatgagaAACTG
CAATTAATGCCGACAATGCAAACAAAAAGCGAGGAAGAGAAGATTTATGG
ACatatttgattgattttataaattaGCACATGGTTGAACTTACAAGATG
CAAAAGTTATTGTCAATAGCGTATCTCCTCGATGTGGCCGCGTTTACAAA
TGCAATGACATCAAACCAAAACTGTTTGATTTCTTCAGAGAAAAGTTTTT
CTTCTCGCATTTCCTCTAAAATGTCTGAAATTCTGTCAGAGTAGATCAAC
AATTCCGTTGATGTCATCTTTTCTACAACAGCTGGTTCAACAAAACGTTC
TTCACTTTCGATAACAATGTCCAATTTTCTGTCAAGCTGTAAGAATAAAC
AAGATGAAATTTAAATGATTACTGCATATTTTTACAAGcacttctctttt
ttttggatttccttCTACAGGCGGAAAaagcggctagttcgaaacgcagg
gcACAGTTCACAGGTCACAGGGCACAGGACATAAaaactacagaccggaa
aattaTAATAAGTTCGTAATATATAATTCATTACaaatagtcccgctgct
gag Run BLAST on NCBI transcript from alignment at sc0003508:4716..6268 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042581 ID=TCONS_00042581|Name=TCONS_00042581|organism=Clytia hemisphaerica|type=transcript|length=1553bp|location=Sequence derived from alignment at sc0003508:4716..6268 (Clytia hemisphaerica)
ctcagcagcgggactatttGTAATGAATTATATATTACGAACTTATTAta
attttccggtctgtagtttTTATGTCCTGTGCCCTGTGACCTGTGAACTG
TgccctgcgtttcgaactagccgcttTTTCCGCCTGTAGaaggaaatcca
aaaaaaagagaagtgCTTGTAAAAATATGCAGTAATCATTTAAATTTCAT
CTTGTTTATTCTTACAGCTTGACAGAAAATTGGACATTGTTATCGAAAGT
GAAGAACGTTTTGTTGAACCAGCTGTTGTAGAAAAGATGACATCAACGGA
ATTGTTGATCTACTCTGACAGAATTTCAGACATTTTAGAGGAAATGCGAG
AAGAAAAACTTTTCTCTGAAGAAATCAAACAGTTTTGGTTTGATGTCATT
GCATTTGTAAACGCGGCCACATCGAGGAGATACGCTATTGACAATAACTT
TTGCATCTTGTAAGTTCAACCATGTGCtaatttataaaatcaatcaaata
tGTCCATAAATCTTCTCTTCCTCGCTTTTTGTTTGCATTGTCGGCATTAA
TTGCAGTTtctcatttgaaagaaaatcagATATTTTGAAAGGAAACTCCC
CCGGGGTGAGTACTAGGTTTGCGGGATGACGGGTATATGTGCCGCCCTAC
TTTTGAAAATCTCAACTTTCAGGGTctaaaattgaggggaaaagaCGAAC
ATTTGTGAATTTTGTAACCCTTAAGGGGAGTAAAACTAGATATTGtggtt
tttacgacccttagcgggaatttgtaggtccaaaaaaggctACCTGTATC
CTCCATTTGCCTAGGTATCCCCCTGGGAAACTTACAAATTTAGTTTCACT
AGActagagtcgtttataatgcgtgcaATACAGTAATAAGTTCAATCGAt
tcacattttcatttttcagacatTCTGAAAAGCGCAAACTTATCAAGACA
GTGGACTGTGATTGTATCAAAAGTGATGTGCCCGATGTTGTTCTTATAAG
TGATACTGAAAGTGACTCTGAAAGCTTCAAGATCGATAATAGCTTAGAAC
TACAAGGTAATACTTATTTAAATTGGTCTGGTTTGGAAAAACGTTCTAGA
TTACATGGTTTCTTGAACTTTACGGGCTTATAGTCTAGGAGGCACTAGCG
ATGATGGAAATACATGAGCTAGTCATATCTAATAAATAAAGACTAAATCA
ATTATGACGTTAGATAGAATTGATTAATGACATACCACCTGCCTCGggtg
agttacggcatgtccaacTTTGCCGTATTTTTTAGCAACCCGATTTAGCA
CTCAATTCTAGGTACTAGTAATAATTTATATACCAAAATAACCATATTAA
GACACAGAACAACCTGATTGCTGTgttgaaatcaattttccacACTATGG
ACAGATATTCTCGTGTGTGTTACGGCCTgtctaaaaaactgaaaacctAC
AAGACCCGAATCCCACCAATAgcatggctccgactggggttctaggtccc
cccgccaaatttaggtcccccctaagaacaaggtccccccagcctgataa
aat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042581-exon-sc0003508-1491911889:4716..6268 | TCONS_00042581-exon-sc0003508-1491911889:4716..6268 | Clytia hemisphaerica | exon |
| TCONS_00042581-exon-sc0003508-1510915933:4716..6268 | TCONS_00042581-exon-sc0003508-1510915933:4716..6268 | Clytia hemisphaerica | exon |
| TCONS_00042581-exon-sc0003508-1575043694:4716..6268 | TCONS_00042581-exon-sc0003508-1575043694:4716..6268 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003508 | supercontig | sc0003508:4716..6268 . |
Blast
The following BLAST results are available for this feature:
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