TCONS_00042574 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042574
Unique NameTCONS_00042574
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length559

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042574 ID=TCONS_00042574|Name=TCONS_00042574|organism=Clytia hemisphaerica|type=transcript|length=559bp
TTCCTCTATAAATTTACCGTaatttggtctaatgtcgacatccctcatct
aattccaacaccatttttatcagctgaaattgatagaaaggtcaaaacta
tttttctttgcttagtggtcagagaggaataatcctttttcaatcagtga
ttcaagctttcatattaatcctgtctctaaagaagggtgtcggaattaga
catCAATTCAAACTCTCCAAAATACTGCAATCAGGATCATGACTTTCAAT
GGTCCACGAGTCTCTGCCACTCCCCTTTTAGCAAATCTAGAATTACTCAA
TGTCTTTGACCAAGTCAAAGTAATGAACATCAAGTATATTCACAAATATT
TCAACAACAACCTTCCCGCTGAATCCCTTCAAActcttgtttttgaaaaa
gatccTCACAAGATTGAAACCAAAGACCAGTTCATTGATCTTATTTTCCG
CCCCAATGTTAACACTACAAATTTTAGATTACACTCTTTTACTAGAATTT
CTTCAAATCAATGGAATGAGcttcaaagaaaatttactgACGAAAAAATC
TCTGATTTA
Run BLAST on NCBI

protein sequence of TCONS_00042574-protein

>TCONS_00042574-protein ID=TCONS_00042574-protein|Name=TCONS_00042574-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MTFNGPRVSATPLLANLELLNVFDQVKVMNIKYIHKYFNNNLPAESLQTL
VFEKDPHKIETKDQFIDLIFRPNVNTTNFRLHSFTRISSNQWNELQRKFT
DEKISDL
Run BLAST on NCBI

transcript from alignment at sc0003502:4531..5089

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042574 ID=TCONS_00042574|Name=TCONS_00042574|organism=Clytia hemisphaerica|type=transcript|length=559bp|location=Sequence derived from alignment at sc0003502:4531..5089 (Clytia hemisphaerica)
TAAATCAGAGATTTTTTCGTcagtaaattttctttgaagCTCATTCCATT
GATTTGAAGAAATTCTAGTAAAAGAGTGTAATCTAAAATTTGTAGTGTTA
ACATTGGGGCGGAAAATAAGATCAATGAACTGGTCTTTGGTTTCAATCTT
GTGAggatctttttcaaaaacaagagTTTGAAGGGATTCAGCGGGAAGGT
TGTTGTTGAAATATTTGTGAATATACTTGATGTTCATTACTTTGACTTGG
TCAAAGACATTGAGTAATTCTAGATTTGCTAAAAGGGGAGTGGCAGAGAC
TCGTGGACCATTGAAAGTCATGATCCTGATTGCAGTATTTTGGAGAGTTT
GAATTGatgtctaattccgacacccttctttagagacaggattaatatga
aagcttgaatcactgattgaaaaaggattattcctctctgaccactaagc
aaagaaaaatagttttgacctttctatcaatttcagctgataaaaatggt
gttggaattagatgagggatgtcgacattagaccaaattACGGTAAATTT
ATAGAGGAA

Coding sequence (CDS) from alignment at sc0003502:4531..5089

>TCONS_00042574 ID=TCONS_00042574|Name=TCONS_00042574|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0003502:4531..5089 (Clytia hemisphaerica)
TAAATCAGAGATTTTTTCGTcagtaaattttctttgaagCTCATTCCATT
GATTTGAAGAAATTCTAGTAAAAGAGTGTAATCTAAAATTTGTAGTGTTA
ACATTGGGGCGGAAAATAAGATCAATGAACTGGTCTTTGGTTTCAATCTT
GTGAggatctttttcaaaaacaagagTTTGAAGGGATTCAGCGGGAAGGT
TGTTGTTGAAATATTTGTGAATATACTTGATGTTCATTACTTTGACTTGG
TCAAAGACATTGAGTAATTCTAGATTTGCTAAAAGGGGAGTGGCAGAGAC
TCGTGGACCATTGAAAGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026391XLOC_026391Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042574-exon-sc0003502-1491911889:4531..5089TCONS_00042574-exon-sc0003502-1491911889:4531..5089Clytia hemisphaericaexon
TCONS_00042574-exon-sc0003502-1510915933:4531..5089TCONS_00042574-exon-sc0003502-1510915933:4531..5089Clytia hemisphaericaexon
TCONS_00042574-exon-sc0003502-1575043694:4531..5089TCONS_00042574-exon-sc0003502-1575043694:4531..5089Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042574-proteinTCONS_00042574-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003502supercontigsc0003502:4531..5089 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00189	0.933242	2.36634	4.12193	2.346	1.66737	1.42192	1.10882	0.56653	0.345358	0.82514	0.97858	0.436412	0.875296	0.297108	0.59727	0.245429	0.79521	1.49144	0.484479	0.715639	0.768419	0	0.259623	0.882019	1.64688	0.145574	0.614461	0.575823	0.551444
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042574 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top