TCONS_00042571 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042571
Unique NameTCONS_00042571
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042571 ID=TCONS_00042571|Name=TCONS_00042571|organism=Clytia hemisphaerica|type=transcript|length=531bp
GTAAGATAAAATCTAACGTTTTGTCAGTCCGCAGGTCCAGGTAGACGTAA
CCAAGCATTTTTAAACATCGCTCGTTTTTAAAGAAATGGCAGTTTTCAGC
ATGCTGTCAGCTGGTTGTTTGTATTTCTGTCAtgttttttgtgtttgtta
GAGTATTTACgaaggtttttttttcttttatgtgtagttagtaaatgcac
caataaaATGATAGGAATCTTACAATTAAAGAGACATGACATTAAGCCAG
Acccaatcaatcgaacttgtcgaaccaatcgaataatcgaactccatcgt
gCATTGAAAAAAAGCACCCCATGATATTGACTCAATGaaaaagtgtgcca
aatttcagccaaatctgatAACTATTTTTTAAGTGTCCAGCCTGGAgtct
gccctaaagttttcggacagaAAACATCGTCAGATTCTAGCTCcactgaa
attgaaaatgtctATATGGTCCGTAGAATCTTCTATACTaattgagttta
tgaaaaatttctataacgctagcccagtaac
Run BLAST on NCBI

transcript from alignment at sc0003499:4987..5517

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042571 ID=TCONS_00042571|Name=TCONS_00042571|organism=Clytia hemisphaerica|type=transcript|length=531bp|location=Sequence derived from alignment at sc0003499:4987..5517 (Clytia hemisphaerica)
gttactgggctagcgttatagaaatttttcataaactcaattAGTATAGA
AGATTCTACGGACCATATagacattttcaatttcagtgGAGCTAGAATCT
GACGATGTTTtctgtccgaaaactttagggcagacTCCAGGCTGGACACT
TAAAAAATAGTTatcagatttggctgaaatttggcacactttttCATTGA
GTCAATATCATGGGGTGCTTTTTTTCAATGcacgatggagttcgattatt
cgattggttcgacaagttcgattgattgggTCTGGCTTAATGTCATGTCT
CTTTAATTGTAAGATTCCTATCATtttattggtgcatttactaactacac
ataaaagaaaaaaaaaccttcGTAAATACTCtaacaaacacaaaaaacaT
GACAGAAATACAAACAACCAGCTGACAGCATGCTGAAAACTGCCATTTCT
TTAAAAACGAGCGATGTTTAAAAATGCTTGGTTACGTCTACCTGGACCTG
CGGACTGACAAAACGTTAGATTTTATCTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026389XLOC_026389Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042571-exon-sc0003499-1491911889:4987..5517TCONS_00042571-exon-sc0003499-1491911889:4987..5517Clytia hemisphaericaexon
TCONS_00042571-exon-sc0003499-1510915933:4987..5517TCONS_00042571-exon-sc0003499-1510915933:4987..5517Clytia hemisphaericaexon
TCONS_00042571-exon-sc0003499-1575043694:4987..5517TCONS_00042571-exon-sc0003499-1575043694:4987..5517Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003499supercontigsc0003499:4987..5517 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.991614	0.752095	1.24751	1.22049	0.594332	0.704474	0.566612	1.59136	0.371384	0.345014	0	0.807167	0.366384	0.760987	0.312817	0.402841	0.496267	0.254329	0	0.857926	0.745693	1.55881	0	0.229704	0.591473	0.633451	0.755389	1.12864	0	0.747568
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042571 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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