TCONS_00042569 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042569
Unique NameTCONS_00042569
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1040

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042569 ID=TCONS_00042569|Name=TCONS_00042569|organism=Clytia hemisphaerica|type=transcript|length=1040bp
NTATCAACAGTAGAAAAAGCTTGGAAAAGTATtaagatttcactgaaaaa
gaaaatattgtacTGGTCAGAGTTCATAATTTATTGTTATTCTGGAGAAA
GTATATGCTAGTGTTATGGTTTTTAGTTTGATTTTACTATGAATGGGTTG
TCAGTATCTGAGTTATGTTGTCTTTTTTGTTGCCCTCCTTTCCCATCTGT
GATCGCCTCAAAGTTAGCGTTTTTACCACCTGAGCCAACTTACACTACAC
AGGAACTTGGAGATGGTACCTGGGCATTACATTTGAGTGAGAGAGCAGAG
TGGCAATATGGACAAAAAGAACTTGACTGTATCGAAGTGTTCCAAGCTCG
TACAAACAGAGGAAATAGGATTTCGTGCATGTATGTTAGATGCTCACCAA
CAGCAAAATTTACTATATTATTCAGTCATGGTAATGCTGTTGACTTAGGA
CAAATGAGTAGCTTTTATATAGGACTTGGAACAAGGATAAACTGTAACAT
CTTTTCATATGATTATTCTGGTTATGGACAAAGTTCAGGGAAAccaacag
aaaaaaatatttatgcaGACATTGATGCTGCCTGGAACTCTTTACGTACA
CGATATGGTGTAACACCTGAAAATATTATTGTTTACGGTCAAAGTATTGG
AACTGTCCCAACAGTTGATTTAGCAGCTCGTTTTGAATGTGCTGGTGTTA
TTTTACATTCTCCTTTGATGTCAGGAATGCGTGTTGCATTTCCAGAGACA
AAAAAGACCTATTGCTTTGATGTATTCCCTAGGTGAGTAATTTCATTGGG
GGTAACATAGACTTTTTGAATGACACAATGTCATAATGTATGTGAATACC
GCGCCGTCAATTGCTCTAtaaacttgggactatctgacaaaacatgggac
ggcaattcgggcCACcgtttcaccgaacctccaacgtcatttgatttgag
ttaatgaatggcctattaaaaaatacacaatttctcttccGCACCAGATG
Ccagtcaaaaattgtgtgaagtatcaaaaaatcaacaaaa
Run BLAST on NCBI

protein sequence of TCONS_00042569-protein

>TCONS_00042569-protein ID=TCONS_00042569-protein|Name=TCONS_00042569-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MNGLSVSELCCLFCCPPFPSVIASKLAFLPPEPTYTTQELGDGTWALHLS
ERAEWQYGQKELDCIEVFQARTNRGNRISCMYVRCSPTAKFTILFSHGNA
VDLGQMSSFYIGLGTRINCNIFSYDYSGYGQSSGKPTEKNIYADIDAAWN
SLRTRYGVTPENIIVYGQSIGTVPTVDLAARFECAGVILHSPLMSGMRVA
FPETKKTYCFDVFPR
Run BLAST on NCBI

transcript from alignment at sc0003498:47..1086

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042569 ID=TCONS_00042569|Name=TCONS_00042569|organism=Clytia hemisphaerica|type=transcript|length=1040bp|location=Sequence derived from alignment at sc0003498:47..1086 (Clytia hemisphaerica)
ttttgttgattttttgatacttcacacaatttttgactgGCATCTGGTGC
ggaagagaaattgtgtattttttaataggccattcattaactcaaatcaa
atgacgttggaggttcggtgaaacgGTGgcccgaattgccgtcccatgtt
ttgtcagatagtcccaagtttaTAGAGCAATTGACGGCGCGGTATTCACA
TACATTATGACATTGTGTCATTCAAAAAGTCTATGTTACCCCCAATGAAA
TTACTCACCTAGGGAATACATCAAAGCAATAGGTCTTTTTTGTCTCTGGA
AATGCAACACGCATTCCTGACATCAAAGGAGAATGTAAAATAACACCAGC
ACATTCAAAACGAGCTGCTAAATCAACTGTTGGGACAGTTCCAATACTTT
GACCGTAAACAATAATATTTTCAGGTGTTACACCATATCGTGTACGTAAA
GAGTTCCAGGCAGCATCAATGTCtgcataaatatttttttctgttggTTT
CCCTGAACTTTGTCCATAACCAGAATAATCATATGAAAAGATGTTACAGT
TTATCCTTGTTCCAAGTCCTATATAAAAGCTACTCATTTGTCCTAAGTCA
ACAGCATTACCATGACTGAATAATATAGTAAATTTTGCTGTTGGTGAGCA
TCTAACATACATGCACGAAATCCTATTTCCTCTGTTTGTACGAGCTTGGA
ACACTTCGATACAGTCAAGTTCTTTTTGTCCATATTGCCACTCTGCTCTC
TCACTCAAATGTAATGCCCAGGTACCATCTCCAAGTTCCTGTGTAGTGTA
AGTTGGCTCAGGTGGTAAAAACGCTAACTTTGAGGCGATCACAGATGGGA
AAGGAGGGCAACAAAAAAGACAACATAACTCAGATACTGACAACCCATTC
ATAGTAAAATCAAACTAAAAACCATAACACTAGCATATACTTTCTCCAGA
ATAACAATAAATTATGAACTCTGACCAgtacaatattttctttttcagtg
aaatcttaATACTTTTCCAAGCTTTTTCTACTGTTGATAN

Coding sequence (CDS) from alignment at sc0003498:47..1086

>TCONS_00042569 ID=TCONS_00042569|Name=TCONS_00042569|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0003498:47..1086 (Clytia hemisphaerica)
TCACCTAGGGAATACATCAAAGCAATAGGTCTTTTTTGTCTCTGGAAATG
CAACACGCATTCCTGACATCAAAGGAGAATGTAAAATAACACCAGCACAT
TCAAAACGAGCTGCTAAATCAACTGTTGGGACAGTTCCAATACTTTGACC
GTAAACAATAATATTTTCAGGTGTTACACCATATCGTGTACGTAAAGAGT
TCCAGGCAGCATCAATGTCtgcataaatatttttttctgttggTTTCCCT
GAACTTTGTCCATAACCAGAATAATCATATGAAAAGATGTTACAGTTTAT
CCTTGTTCCAAGTCCTATATAAAAGCTACTCATTTGTCCTAAGTCAACAG
CATTACCATGACTGAATAATATAGTAAATTTTGCTGTTGGTGAGCATCTA
ACATACATGCACGAAATCCTATTTCCTCTGTTTGTACGAGCTTGGAACAC
TTCGATACAGTCAAGTTCTTTTTGTCCATATTGCCACTCTGCTCTCTCAC
TCAAATGTAATGCCCAGGTACCATCTCCAAGTTCCTGTGTAGTGTAAGTT
GGCTCAGGTGGTAAAAACGCTAACTTTGAGGCGATCACAGATGGGAAAGG
AGGGCAACAAAAAAGACAACATAACTCAGATACTGACAACCCATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026387XLOC_026387Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042569-proteinTCONS_00042569-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042569-exon-sc0003498-1491911889:47..1086TCONS_00042569-exon-sc0003498-1491911889:47..1086Clytia hemisphaericaexon
TCONS_00042569-exon-sc0003498-1510915933:47..1086TCONS_00042569-exon-sc0003498-1510915933:47..1086Clytia hemisphaericaexon
TCONS_00042569-exon-sc0003498-1575043694:47..1086TCONS_00042569-exon-sc0003498-1575043694:47..1086Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003498supercontigsc0003498:47..1086 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
61.5357	54.012	76.8753	72.0546	64.0946	50.1898	45.4162	54.7925	35.9404	43.7884	28.5054	23.1801	24.2411	21.1561	16.6035	20.8642	30.0564	28.1757	16.7215	21.0733	41.2082	40.3075	51.5118	47.0558	28.7598	38.64	39.7444	34.3877	51.2105	57.3559
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022742Hydrolase_4
IPR029058AB_hydrolase
Blast
[Close]
BLAST of TCONS_00042569 vs. Swiss-Prot (Human)
Match: AB17B (Protein ABHD17B OS=Homo sapiens GN=ABHD17B PE=1 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 2.462e-102
Identity = 167/215 (77.67%), Postives = 187/215 (86.98%), Query Frame = 1 
Query:  139 MNGLSVSEXXXXXXXXXXXSVIASKLAFLPPEPTYTTQELGDGT-WALHLSERAEWQYGQKELDCIEVFQARTNRGNRISCMYVRCSPTAKFTILFSHGNAVDLGQMSSFYIGLGTRINCNIFXXXXXXXXXXXXKPTEKNIYADIDAAWNSLRTRYGVTPENIIVYGQSIGTVPTVDLAARFECAGVILHSPLMSGMRVAFPETKKTYCFDVFP 780
            MN LS SELCCLFCCPP P  IASKLAFLPP+PTYT      G+ W LHLSERA+WQY  +E D IE F  RT++GNRI+CM+VRCSP AK+T+LFSHGNAVDLGQMSSFYIGLG+RINCNIFSYDYSGYG SSGKPTEKN+YADI+AAW +LRTRYG+ PEN+I+YGQSIGTVP+VDLAAR+E A VILHSPL SGMRVAFP+TKKTYCFD FP
Sbjct:    1 MNNLSFSELCCLFCCPPCPGKIASKLAFLPPDPTYTLMCDESGSRWTLHLSERADWQYSSREKDAIECFMTRTSKGNRIACMFVRCSPNAKYTLLFSHGNAVDLGQMSSFYIGLGSRINCNIFSYDYSGYGASSGKPTEKNLYADIEAAWLALRTRYGIRPENVIIYGQSIGTVPSVDLAARYESAAVILHSPLTSGMRVAFPDTKKTYCFDAFP 215
The following BLAST results are available for this feature:
BLAST of TCONS_00042569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AB17B2.462e-10277.67Protein ABHD17B OS=Homo sapiens GN=ABHD17B PE=1 SV... [more]
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