TCONS_00042564 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042564
Unique NameTCONS_00042564
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length521

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042564 ID=TCONS_00042564|Name=TCONS_00042564|organism=Clytia hemisphaerica|type=transcript|length=521bp
TCGAAGTTTTCAATACCAACGTTGCGTTAAGATCTCGCCAGAGCTGATTG
AACGAGTTGAAAcatgcaaaaacaccaaaatcgaaggacttcaaaaggaa
attaaagcatgtgaaaacatcatgaaagtacaaaatgaagaaatttccca
actgaaatcaaatgatgtgaactttcttaaaaaagaaatcaaagaaagcc
tGGAAACAAAGATGAGCATACTCGAGAAAAAGATAGAAACAAAGATCGAG
AACATCTTATTCGAAAAGAAGCAAGAGGCGAAAGATGTTAGTTATGCTGA
AGCTGTATCCAAACATATGAATCAAAAATCCAATAAGGTGGAGAAAATAA
CTCGATGTGAAACAGTCGGCAAACAACGATCCACGGCATGTAACCTTATT
TTCCATGGAATCAAAGAACATCTGGAGGATCCCGAGAATACAACGAAAAT
CTACGACGAGAAATTTATAAAGTACAGAATCCTTGGATTACAACTGGGTA
TCAAGGacataaaaattataa
Run BLAST on NCBI

protein sequence of TCONS_00042564-protein

>TCONS_00042564-protein ID=TCONS_00042564-protein|Name=TCONS_00042564-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
RSFQYQRCVKISPELIERVETCKNTKIEGLQKEIKACENIMKVQNEEISQ
LKSNDVNFLKKEIKESLETKMSILEKKIETKIENILFEKKQEAKDVSYAE
AVSKHMNQKSNKVEKITRCETVGKQRSTACNLIFHGIKEHLEDPENTTKI
YDEKFIKYRILGLQLGIKDIKII
Run BLAST on NCBI

transcript from alignment at sc0003495:3536..4056

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042564 ID=TCONS_00042564|Name=TCONS_00042564|organism=Clytia hemisphaerica|type=transcript|length=521bp|location=Sequence derived from alignment at sc0003495:3536..4056 (Clytia hemisphaerica)
ttataatttttatgtCCTTGATACCCAGTTGTAATCCAAGGATTCTGTAC
TTTATAAATTTCTCGTCGTAGATTTTCGTTGTATTCTCGGGATCCTCCAG
ATGTTCTTTGATTCCATGGAAAATAAGGTTACATGCCGTGGATCGTTGTT
TGCCGACTGTTTCACATCGAGTTATTTTCTCCACCTTATTGGATTTTTGA
TTCATATGTTTGGATACAGCTTCAGCATAACTAACATCTTTCGCCTCTTG
CTTCTTTTCGAATAAGATGTTCTCGATCTTTGTTTCTATCTTTTTCTCGA
GTATGCTCATCTTTGTTTCCaggctttctttgatttcttttttaagaaag
ttcacatcatttgatttcagttgggaaatttcttcattttgtactttcat
gatgttttcacatgctttaatttccttttgaagtccttcgattttggtgt
ttttgcatgTTTCAACTCGTTCAATCAGCTCTGGCGAGATCTTAACGCAA
CGTTGGTATTGAAAACTTCGA

Coding sequence (CDS) from alignment at sc0003495:3536..4056

>TCONS_00042564 ID=TCONS_00042564|Name=TCONS_00042564|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0003495:3536..4056 (Clytia hemisphaerica)
tataatttttatgtCCTTGATACCCAGTTGTAATCCAAGGATTCTGTACT
TTATAAATTTCTCGTCGTAGATTTTCGTTGTATTCTCGGGATCCTCCAGA
TGTTCTTTGATTCCATGGAAAATAAGGTTACATGCCGTGGATCGTTGTTT
GCCGACTGTTTCACATCGAGTTATTTTCTCCACCTTATTGGATTTTTGAT
TCATATGTTTGGATACAGCTTCAGCATAACTAACATCTTTCGCCTCTTGC
TTCTTTTCGAATAAGATGTTCTCGATCTTTGTTTCTATCTTTTTCTCGAG
TATGCTCATCTTTGTTTCCaggctttctttgatttcttttttaagaaagt
tcacatcatttgatttcagttgggaaatttcttcattttgtactttcatg
atgttttcacatgctttaatttccttttgaagtccttcgattttggtgtt
tttgcatgTTTCAACTCGTTCAATCAGCTCTGGCGAGATCTTAACGCAAC
GTTGGTATTGAAAACTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026382XLOC_026382Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042564-proteinTCONS_00042564-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042564-exon-sc0003495-1491911889:3536..4056TCONS_00042564-exon-sc0003495-1491911889:3536..4056Clytia hemisphaericaexon
TCONS_00042564-exon-sc0003495-1510915933:3536..4056TCONS_00042564-exon-sc0003495-1510915933:3536..4056Clytia hemisphaericaexon
TCONS_00042564-exon-sc0003495-1575043694:3536..4056TCONS_00042564-exon-sc0003495-1575043694:3536..4056Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003495supercontigsc0003495:3536..4056 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.01616	1.27413	2.14462	3.0764	5.97341	2.6906	2.29053	3.69533	0.928644	1.40929	0.250036	0.783348	0.707919	0.700914	0.0760421	0.0737936	0	0.409106	0.120877	0.126489	1.00858	0.86449	0.500086	0.616356	4.03063	3.78938	0.414688	0.370643	0.75375	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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