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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042558 ID=TCONS_00042558|Name=TCONS_00042558|organism=Clytia hemisphaerica|type=transcript|length=957bp
AATGAAACCAGGGAACCTTTGAAAGACGGTAGCATATCTTTGTTTGTGCT
GACGTATTTTTCATGTTCGATGTTTTCACCATAGGTCACCTCTGCATGGA
AATCACCTCTGACTTGATACCTGATGAACAAGTTCAGAAGAACATTGTCA
GGATGATGATTTGACGCAATTACGGCTAATTTCTTCAACGGATGAAAAAC
TCGTTCTTCGTCCTCGGCATTCACAGATGGTAAAGAGACGATACGATATA
GCATTGGACCATGCCCAGTTAATGAGTGAAAGTATTGACCATGAAGTTTA
CGAGTTGTCATCTTCTTCTTTATCTTACTTGGTTGTGGCAGAATTCTCTT
GACAGCTAGTGCGTGCAAGAACGCCGTGTTGTGGTACCGAAAGATTCGCG
AGCTGGTCCGATTGACCTCGTTTGAATAAATGATTTCCTGGATTTCAACC
AGTTGCAAAAGTAGCTCGTAAACATCTGGATCGATCTTGTGGTAAACCAA
GCCACATACATCAACAAGGCTCTTTCGATAGTCGGCTCCAGTCTTCGCGT
CTTTTTTGAACGACACGTCTATTGCATCCTGCAAGAGACTCTTTTCATTT
CCGCCCAGCGTGCCCGGTAGCAGTTCGTAGAGATTGGCGATATGGCCCTT
AATGGCATGTAATGGCTCGATTGGAACTACCTCATACCGATCTAAATTGC
ATTCTTTCAGTGTTCGTTGAGGGACATGGAACATTAGGGCTGGCAAACGT
TGGATTCCTGCCATCTCTTCGACCAATTTGAATAGGAGAGATGGTTTCAG
TTCCCCATCTACATACTTGATATCGCGTTGAATCAACTCAGAAGCGATTT
GGTCACGATCGATCCTCGCCAGAAAACTCGACTTTTGTTCGTTGACACAC
TTTTTAGAGTacctataaaatgaaaataaattccagtcgtaaatttttgt
tttttcc Run BLAST on NCBI protein sequence of TCONS_00042558-protein >TCONS_00042558-protein ID=TCONS_00042558-protein|Name=TCONS_00042558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
EKTKIYDWNLFSFYRYSKKCVNEQKSSFLARIDRDQIASELIQRDIKYVD
GELKPSLLFKLVEEMAGIQRLPALMFHVPQRTLKECNLDRYEVVPIEPLH
AIKGHIANLYELLPGTLGGNEKSLLQDAIDVSFKKDAKTGADYRKSLVDV
CGLVYHKIDPDVYELLLQLVEIQEIIYSNEVNRTSSRIFRYHNTAFLHAL
AVKRILPQPSKIKKKMTTRKLHGQYFHSLTGHGPMLYRIVSLPSVNAEDE
ERVFHPLKKLAVIASNHHPDNVLLNLFIRYQVRGDFHAEVTYGENIEHEK
YVSTNKDMLPSFKGSLVS Run BLAST on NCBI transcript from alignment at sc0003490:2983..3939 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042558 ID=TCONS_00042558|Name=TCONS_00042558|organism=Clytia hemisphaerica|type=transcript|length=957bp|location=Sequence derived from alignment at sc0003490:2983..3939 (Clytia hemisphaerica)
ggaaaaaacaaaaatttacgactggaatttattttcattttataggtACT
CTAAAAAGTGTGTCAACGAACAAAAGTCGAGTTTTCTGGCGAGGATCGAT
CGTGACCAAATCGCTTCTGAGTTGATTCAACGCGATATCAAGTATGTAGA
TGGGGAACTGAAACCATCTCTCCTATTCAAATTGGTCGAAGAGATGGCAG
GAATCCAACGTTTGCCAGCCCTAATGTTCCATGTCCCTCAACGAACACTG
AAAGAATGCAATTTAGATCGGTATGAGGTAGTTCCAATCGAGCCATTACA
TGCCATTAAGGGCCATATCGCCAATCTCTACGAACTGCTACCGGGCACGC
TGGGCGGAAATGAAAAGAGTCTCTTGCAGGATGCAATAGACGTGTCGTTC
AAAAAAGACGCGAAGACTGGAGCCGACTATCGAAAGAGCCTTGTTGATGT
ATGTGGCTTGGTTTACCACAAGATCGATCCAGATGTTTACGAGCTACTTT
TGCAACTGGTTGAAATCCAGGAAATCATTTATTCAAACGAGGTCAATCGG
ACCAGCTCGCGAATCTTTCGGTACCACAACACGGCGTTCTTGCACGCACT
AGCTGTCAAGAGAATTCTGCCACAACCAAGTAAGATAAAGAAGAAGATGA
CAACTCGTAAACTTCATGGTCAATACTTTCACTCATTAACTGGGCATGGT
CCAATGCTATATCGTATCGTCTCTTTACCATCTGTGAATGCCGAGGACGA
AGAACGAGTTTTTCATCCGTTGAAGAAATTAGCCGTAATTGCGTCAAATC
ATCATCCTGACAATGTTCTTCTGAACTTGTTCATCAGGTATCAAGTCAGA
GGTGATTTCCATGCAGAGGTGACCTATGGTGAAAACATCGAACATGAAAA
ATACGTCAGCACAAACAAAGATATGCTACCGTCTTTCAAAGGTTCCCTGG
TTTCATT Coding sequence (CDS) from alignment at sc0003490:2983..3939 >TCONS_00042558 ID=TCONS_00042558|Name=TCONS_00042558|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0003490:2983..3939 (Clytia hemisphaerica)
gaaaaaacaaaaatttacgactggaatttattttcattttataggtACTC
TAAAAAGTGTGTCAACGAACAAAAGTCGAGTTTTCTGGCGAGGATCGATC
GTGACCAAATCGCTTCTGAGTTGATTCAACGCGATATCAAGTATGTAGAT
GGGGAACTGAAACCATCTCTCCTATTCAAATTGGTCGAAGAGATGGCAGG
AATCCAACGTTTGCCAGCCCTAATGTTCCATGTCCCTCAACGAACACTGA
AAGAATGCAATTTAGATCGGTATGAGGTAGTTCCAATCGAGCCATTACAT
GCCATTAAGGGCCATATCGCCAATCTCTACGAACTGCTACCGGGCACGCT
GGGCGGAAATGAAAAGAGTCTCTTGCAGGATGCAATAGACGTGTCGTTCA
AAAAAGACGCGAAGACTGGAGCCGACTATCGAAAGAGCCTTGTTGATGTA
TGTGGCTTGGTTTACCACAAGATCGATCCAGATGTTTACGAGCTACTTTT
GCAACTGGTTGAAATCCAGGAAATCATTTATTCAAACGAGGTCAATCGGA
CCAGCTCGCGAATCTTTCGGTACCACAACACGGCGTTCTTGCACGCACTA
GCTGTCAAGAGAATTCTGCCACAACCAAGTAAGATAAAGAAGAAGATGAC
AACTCGTAAACTTCATGGTCAATACTTTCACTCATTAACTGGGCATGGTC
CAATGCTATATCGTATCGTCTCTTTACCATCTGTGAATGCCGAGGACGAA
GAACGAGTTTTTCATCCGTTGAAGAAATTAGCCGTAATTGCGTCAAATCA
TCATCCTGACAATGTTCTTCTGAACTTGTTCATCAGGTATCAAGTCAGAG
GTGATTTCCATGCAGAGGTGACCTATGGTGAAAACATCGAACATGAAAAA
TACGTCAGCACAAACAAAGATATGCTACCGTCTTTCAAAGGTTCCCTGGT
TTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042558-exon-sc0003490-1491911889:2983..3939 | TCONS_00042558-exon-sc0003490-1491911889:2983..3939 | Clytia hemisphaerica | exon |
| TCONS_00042558-exon-sc0003490-1510915933:2983..3939 | TCONS_00042558-exon-sc0003490-1510915933:2983..3939 | Clytia hemisphaerica | exon |
| TCONS_00042558-exon-sc0003490-1575043694:2983..3939 | TCONS_00042558-exon-sc0003490-1575043694:2983..3939 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003490 | supercontig | sc0003490:2983..3939 . |
Blast
The following BLAST results are available for this feature:
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