TCONS_00042553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042553
Unique NameTCONS_00042553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1805

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042553 ID=TCONS_00042553|Name=TCONS_00042553|organism=Clytia hemisphaerica|type=transcript|length=1805bp
AACAGTGGATTAACCCACCATGGCGAAGCCATTGGAGAAGAAGAGGAATT
AACACCAACCCTTGAGAACTTTATTGTTTTACAGTGGCTCCATTTGCTAC
ACAAGGACTTACCTACTCTCGTCAAACAGAGATATGGTACAGAATTACGC
TCTCGAACATTAGCTTCCATAAAACCTGAAATATCGCAAGCAATGGACTC
CCTCCTCGAAAGTATCCAGTCTAATGACGAAGCCAAAGTCTTACGTTCAG
CTTCATCGTTCCATCGCTCAAAACAACCCTCATCGTCAACACGTCGACCA
TCCTCCATCAAAGCATCATGCCCACTATGTTCGTCCATGAACCGGCCATC
CAACCACTTCCTTAGCAAATGTCAGTTCCTCCCAGACCAAGACCGAAGAT
TCATGGCCAAAGCCCGCCTTATTGCTGCCCTTGACGAGAATGACCAACCT
GAAATTGACCTCCAATCTGCTGAGGACCTACCGTCCCAAGTTGCAGCCAT
CAGCTTACCATCATCAACAAGACGTGTCCAAATCAAATCCTCTCCTGTTG
TTAACATGACATATAAACAATATGACATTTCTACGACACTGGACACAGGC
TCCGAAACTAACATGATCAGTGAATCTACAGCACGCCTCATACACGCTCC
CATAACTCCAAGTTCGCAGAGCGCTGTCCAAGCGGATGGTCAGTCCGAAC
TCTCAGTAATTGGTGAAACTCGAATTAACTTGACATTCCAtaacaaaaca
ttttctttggaaGCACTAGTTGTTAAAAACCTTGATGGAGATGTTATTGC
AGGATACAACGGAGCCAGTGGACCAATCAAAGCAATTGTCAATATGGGTC
CAGTTGAACCTCCTCAACGTAAAGGGAAGGTTCCGCAGTATTCAAACGAT
AAACTTCACGAACTCCAAGCTAAATGTGACGAGTTAGAGAGACTCCAGGT
CCTTCGTAAACCAGAGGATCTTGGTATAACTCCAGAGTATCTTAACCCTT
CGTTTCTCGTGAAGAAACCTTCAGGTGGATTTCGTCTTGTTACTTCCTTT
GGTGAAGTAGCCCAATACTCCAAACCGCAACCCGCCCTCATGCCTGACGT
TAATGCAACCCTCCAATCAATTGGCCAGTGGAAGTATATCATCCAAACCG
ACCTCACCCAAGCATTCTACCAAATTCCGCTTGCAAGGAAGTCTGTTAAA
TATTGTGGAATATCAACACCTTTTCGTGGCGCCCGTGTCTACGCCAGATC
TGCGATGGGCATGCCTGGATCGGAAACTGCATTAGAAGAGCTTCTGTCCC
GCGTCCTCGGTGAACTTATTGAGAACGGCTACGTAGCCAAAGTTGCCGAC
GATCTTTACTGTGGAGGGAATACACCTAGAGAACTTTTATCGAATTGGCG
CAAAGTATTGACAGCACTTAACACTAACAAACTAACGTTGTCCGCTCGCA
AGACCGTTATTGCTCCCAAGTCCGCCACCATTCTCGGTTGGATATGGTCA
GAAGGAACCTTGAAAGCCTCATCACATCGTATTTCTACTCTCTCCACCTG
TGCTCGCCCCGATAAAGTTAAAGGCTTACGATCCTATTTGGGTGCCTACA
AGTTTCTATCACGTGTCATCCCAAATTGCTCGACCTACCTCGCACCGTTA
GAGTCATTAGTTGCTGGCAAAGCCTCCACCGACGCTCTTAACTGGACCGA
TGAGCTCCTTCAAGTTTTTCGTGATTCCCAGTTACATCTACACAACAACC
GTTCAATCACCATCCCTCAACCAGATGACCAACTGTGGATTGTCACAGAT
GGCGN
Run BLAST on NCBI

protein sequence of TCONS_00042553-protein

>TCONS_00042553-protein ID=TCONS_00042553-protein|Name=TCONS_00042553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=601bp
NSGLTHHGEAIGEEEELTPTLENFIVLQWLHLLHKDLPTLVKQRYGTELR
SRTLASIKPEISQAMDSLLESIQSNDEAKVLRSASSFHRSKQPSSSTRRP
SSIKASCPLCSSMNRPSNHFLSKCQFLPDQDRRFMAKARLIAALDENDQP
EIDLQSAEDLPSQVAAISLPSSTRRVQIKSSPVVNMTYKQYDISTTLDTG
SETNMISESTARLIHAPITPSSQSAVQADGQSELSVIGETRINLTFHNKT
FSLEALVVKNLDGDVIAGYNGASGPIKAIVNMGPVEPPQRKGKVPQYSND
KLHELQAKCDELERLQVLRKPEDLGITPEYLNPSFLVKKPSGGFRLVTSF
GEVAQYSKPQPALMPDVNATLQSIGQWKYIIQTDLTQAFYQIPLARKSVK
YCGISTPFRGARVYARSAMGMPGSETALEELLSRVLGELIENGYVAKVAD
DLYCGGNTPRELLSNWRKVLTALNTNKLTLSARKTVIAPKSATILGWIWS
EGTLKASSHRISTLSTCARPDKVKGLRSYLGAYKFLSRVIPNCSTYLAPL
ESLVAGKASTDALNWTDELLQVFRDSQLHLHNNRSITIPQPDDQLWIVTD
G
Run BLAST on NCBI

transcript from alignment at sc0003488:5333..7701-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042553 ID=TCONS_00042553|Name=TCONS_00042553|organism=Clytia hemisphaerica|type=transcript|length=2369bp|location=Sequence derived from alignment at sc0003488:5333..7701- (Clytia hemisphaerica)
AACAGTGGATTAACCCACCATGGCGAAGCCATTGGAGAAGAAGAGGAATT
AACACCAACCCTTGAGAACTTTATTGTTTTACAGTGGCTCCATTTGCTAC
ACAAGGACTTACCTACTCTCGTCAAACAGAGATATGGTACAGAATTACGC
TCTCGAACATTAGCTTCCATAAAACCTGAAATATCGCAAGCAATGGACTC
CCTCCTCGAAAGTATCCAGTCTAATGACGAAGCCAAAGTCTTACGTTCAG
CTTCATCGTTCCATCGCTCAAAACAACCCTCATCGTCAACACGTCGACCA
TCCTCCATCAAAGCATCATGCCCACTATGTTCGTCCATGAACCGGCCATC
CAACCACTTCCTTAGCAAATGTCAGTTCCTCCCAGACCAAGACCGAAGAT
TCATGGCCAAAGCCCGCCTTATTGCTGCCCTTGACGAGAATGACCAACCT
GAAATTGACCTCCAATCTGCTGAGGACCTACCGTCCCAAGTTGCAGCCAT
CAGCTTACCATCATCAACAAGACGTGTCCAAATCAAATCCTCTCCTGTTG
TTAACATGACATATAAACAATATGACATTTCTACGACACTGGACACAGGC
TCCGAAACTAACATGATCAGTGAATCTACAGCACGCCTCATACACGCTCC
CATAACTCCAAGTTCGCAGAGCGCTGTCCAAGCGGATGGTCAGTCCGAAC
TCTCAGTAATTGGTGAAACTCGAATTAACTTGACATTCCATAACAAAACA
TTTTCTTTGGAAGCACTAGTTGTTAAAAACCTTGATGGAGATGTTATTGC
AGGTATACCTTTTCTTAGTGAGCACGACATTACGCTCAGACCCTCAAAGA
GACAAGTCAACTTTAGTGATGGGTCAGCCTACGTTTACAACAACCTACGT
ACCTTCAAACACCCTGCTAATGTTAAAAGAACGAGCTCGTACATCCTCCG
TTCCCCAGCCACCACAGTATGGCCCAACGAGTATTTAGAAATGACTGTAC
CCCCGGAATGGGATGAACAAGACATAGTCCTCGAGCCCCGCTCTGGCGAT
AGCAGCAACCGACACCTTTCATGCCCGCCCCCTATGATCACCCGCCCGAA
AGCTGGCAAGATCCGTATACCTAATTCCACGGACCAACCCAAAGTGCTAC
GCAAGAACCAGCAGTTTGCTCAGATCATCACAGCATCAGATCCATCACCA
ACTGTTCCATCTTATCTCCCTGACCAATCATTTGAAGCAATCACACCTAC
ACCTCCATTACACACCATCTTACTCGATGAAAGTAACCAACTCCCGCCCG
ACGTCCGGTCTGCTTTCAAAGATCTTCATCAAGAATTTTCATCCGTATTC
GATCCCTCGTTTCCAGGATACAACGGAGCCAGTGGACCAATCAAAGCAAT
TGTCAATATGGGTCCAGTTGAACCTCCTCAACGTAAAGGGAAGGTTCCGC
AGTATTCAAACGATAAACTTCACGAACTCCAAGCTAAATGTGACGAGTTA
GAGAGACTCCAGGTCCTTCGTAAACCAGAGGATCTTGGTATAACTCCAGA
GTATCTTAACCCTTCGTTTCTCGTGAAGAAACCTTCAGGTGGATTTCGTC
TTGTTACTTCCTTTGGTGAAGTAGCCCAATACTCCAAACCGCAACCCGCC
CTCATGCCTGACGTTAATGCAACCCTCCAATCAATTGGCCAGTGGAAGTA
TATCATCCAAACCGACCTCACCCAAGCATTCTACCAAATTCCGCTTGCAA
GGAAGTCTGTTAAATATTGTGGAATATCAACACCTTTTCGTGGCGCCCGT
GTCTACGCCAGATCTGCGATGGGCATGCCTGGATCGGAAACTGCATTAGA
AGAGCTTCTGTCCCGCGTCCTCGGTGAACTTATTGAGAACGGCTACGTAG
CCAAAGTTGCCGACGATCTTTACTGTGGAGGGAATACACCTAGAGAACTT
TTATCGAATTGGCGCAAAGTATTGACAGCACTTAACACTAACAAACTAAC
GTTGTCCGCTCGCAAGACCGTTATTGCTCCCAAGTCCGCCACCATTCTCG
GTTGGATATGGTCAGAAGGAACCTTGAAAGCCTCATCACATCGTATTTCT
ACTCTCTCCACCTGTGCTCGCCCCGATAAAGTTAAAGGCTTACGATCCTA
TTTGGGTGCCTACAAGTTTCTATCACGTGTCATCCCAAATTGCTCGACCT
ACCTCGCACCGTTAGAGTCATTAGTTGCTGGCAAAGCCTCCACCGACGCT
CTTAACTGGACCGATGAGCTCCTTCAAGTTTTTCGTGATTCCCAGTTACA
TCTACACAACAACCGTTCAATCACCATCCCTCAACCAGATGACCAACTGT
GGATTGTCACAGATGGCGN

Coding sequence (CDS) from alignment at sc0003488:5333..7701-

>TCONS_00042553 ID=TCONS_00042553|Name=TCONS_00042553|organism=Clytia hemisphaerica|type=CDS|length=3606bp|location=Sequence derived from alignment at sc0003488:5333..7701- (Clytia hemisphaerica)
GATACAACGGAGCCAGTGGACCAATCAAAGCAATTGTCAATATGGGTCCA
GTTGAACCTCCTCAACGTAAAGGGAAGGTTCCGCAGTATTCAAACGATAA
ACTTCACGAACTCCAAGCTAAATGTGACGAGTTAGAGAGACTCCAGGTCC
TTCGTAAACCAGAGGATCTTGGTATAACTCCAGAGTATCTTAACCCTTCG
TTTCTCGTGAAGAAACCTTCAGGTGGATTTCGTCTTGTTACTTCCTTTGG
TGAAGTAGCCCAATACTCCAAACCGCAACCCGCCCTCATGCCTGACGTTA
ATGCAACCCTCCAATCAATTGGCCAGTGGAAGTATATCATCCAAACCGAC
CTCACCCAAGCATTCTACCAAATTCCGCTTGCAAGGAAGTCTGTTAAATA
TTGTGGAATATCAACACCTTTTCGTGGCGCCCGTGTCTACGCCAGATCTG
CGATGGGCATGCCTGGATCGGAAACTGCATTAGAAGAGCTTCTGTCCCGC
GTCCTCGGTGAACTTATTGAGAACGGCTACGTAGCCAAAGTTGCCGACGA
TCTTTACTGTGGAGGGAATACACCTAGAGAACTTTTATCGAATTGGCGCA
AAGTATTGACAGCACTTAACACTAACAAACTAACGTTGTCCGCTCGCAAG
ACCGTTATTGCTCCCAAGTCCGCCACCATTCTCGGTTGGATATGGTCAGA
AGGAACCTTGAAAGCCTCATCACATCGTATTTCTACTCTCTCCACCTGTG
CTCGCCCCGATAAAGTTAAAGGCTTACGATCCTATTTGGGTGCCTACAAG
TTTCTATCACGTGTCATCCCAAATTGCTCGACCTACCTCGCACCGTTAGA
GTCATTAGTTGCTGGCAAAGCCTCCACCGACGCTCTTAACTGGACCGATG
AGCTCCTTCAAGTTTTTCGTGATTCCCAGTTACATCTACACAACAACCGT
TCAATCACCATCCCTCAACCAGATGACCAACTGTGGATTGTCACAGATGG
CAACAGTGGATTAACCCACCATGGCGAAGCCATTGGAGAAGAAGAGGAAT
TAACACCAACCCTTGAGAACTTTATTGTTTTACAGTGGCTCCATTTGCTA
CACAAGGACTTACCTACTCTCGTCAAACAGAGATATGGTACAGAATTACG
CTCTCGAACATTAGCTTCCATAAAACCTGAAATATCGCAAGCAATGGACT
CCCTCCTCGAAAGTATCCAGTCTAATGACGAAGCCAAAGTCTTACGTTCA
GCTTCATCGTTCCATCGCTCAAAACAACCCTCATCGTCAACACGTCGACC
ATCCTCCATCAAAGCATCATGCCCACTATGTTCGTCCATGAACCGGCCAT
CCAACCACTTCCTTAGCAAATGTCAGTTCCTCCCAGACCAAGACCGAAGA
TTCATGGCCAAAGCCCGCCTTATTGCTGCCCTTGACGAGAATGACCAACC
TGAAATTGACCTCCAATCTGCTGAGGACCTACCGTCCCAAGTTGCAGCCA
TCAGCTTACCATCATCAACAAGACGTGTCCAAATCAAATCCTCTCCTGTT
GTTAACATGACATATAAACAATATGACATTTCTACGACACTGGACACAGG
CTCCGAAACTAACATGATCAGTGAATCTACAGCACGCCTCATACACGCTC
CCATAACTCCAAGTTCGCAGAGCGCTGTCCAAGCGGATGGTCAGTCCGAA
CTCTCAGTAATTGGTGAAACTCGAATTAACTTGACATTCCATAACAAAAC
ATTTTCTTTGGAAGCACTAGTTGTTAAAAACCTTGATGGAGATGTTATTG
CAGGATACAACGGAGCCAGTGGACCAATCAAAGCAATTGTCAATATGGGT
CCAGTTGAACCTCCTCAACGTAAAGGGAAGGTTCCGCAGTATTCAAACGA
TAAACTTCACGAACTCCAAGCTAAATGTGACGAGTTAGAGAGACTCCAGG
TCCTTCGTAAACCAGAGGATCTTGGTATAACTCCAGAGTATCTTAACCCT
TCGTTTCTCGTGAAGAAACCTTCAGGTGGATTTCGTCTTGTTACTTCCTT
TGGTGAAGTAGCCCAATACTCCAAACCGCAACCCGCCCTCATGCCTGACG
TTAATGCAACCCTCCAATCAATTGGCCAGTGGAAGTATATCATCCAAACC
GACCTCACCCAAGCATTCTACCAAATTCCGCTTGCAAGGAAGTCTGTTAA
ATATTGTGGAATATCAACACCTTTTCGTGGCGCCCGTGTCTACGCCAGAT
CTGCGATGGGCATGCCTGGATCGGAAACTGCATTAGAAGAGCTTCTGTCC
CGCGTCCTCGGTGAACTTATTGAGAACGGCTACGTAGCCAAAGTTGCCGA
CGATCTTTACTGTGGAGGGAATACACCTAGAGAACTTTTATCGAATTGGC
GCAAAGTATTGACAGCACTTAACACTAACAAACTAACGTTGTCCGCTCGC
AAGACCGTTATTGCTCCCAAGTCCGCCACCATTCTCGGTTGGATATGGTC
AGAAGGAACCTTGAAAGCCTCATCACATCGTATTTCTACTCTCTCCACCT
GTGCTCGCCCCGATAAAGTTAAAGGCTTACGATCCTATTTGGGTGCCTAC
AAGTTTCTATCACGTGTCATCCCAAATTGCTCGACCTACCTCGCACCGTT
AGAGTCATTAGTTGCTGGCAAAGCCTCCACCGACGCTCTTAACTGGACCG
ATGAGCTCCTTCAAGTTTTTCGTGATTCCCAGTTACATCTACACAACAAC
CGTTCAATCACCATCCCTCAACCAGATGACCAACTGTGGATTGTCACAGA
TGGCAACAGTGGATTAACCCACCATGGCGAAGCCATTGGAGAAGAAGAGG
AATTAACACCAACCCTTGAGAACTTTATTGTTTTACAGTGGCTCCATTTG
CTACACAAGGACTTACCTACTCTCGTCAAACAGAGATATGGTACAGAATT
ACGCTCTCGAACATTAGCTTCCATAAAACCTGAAATATCGCAAGCAATGG
ACTCCCTCCTCGAAAGTATCCAGTCTAATGACGAAGCCAAAGTCTTACGT
TCAGCTTCATCGTTCCATCGCTCAAAACAACCCTCATCGTCAACACGTCG
ACCATCCTCCATCAAAGCATCATGCCCACTATGTTCGTCCATGAACCGGC
CATCCAACCACTTCCTTAGCAAATGTCAGTTCCTCCCAGACCAAGACCGA
AGATTCATGGCCAAAGCCCGCCTTATTGCTGCCCTTGACGAGAATGACCA
ACCTGAAATTGACCTCCAATCTGCTGAGGACCTACCGTCCCAAGTTGCAG
CCATCAGCTTACCATCATCAACAAGACGTGTCCAAATCAAATCCTCTCCT
GTTGTTAACATGACATATAAACAATATGACATTTCTACGACACTGGACAC
AGGCTCCGAAACTAACATGATCAGTGAATCTACAGCACGCCTCATACACG
CTCCCATAACTCCAAGTTCGCAGAGCGCTGTCCAAGCGGATGGTCAGTCC
GAACTCTCAGTAATTGGTGAAACTCGAATTAACTTGACATTCCATAACAA
AACATTTTCTTTGGAAGCACTAGTTGTTAAAAACCTTGATGGAGATGTTA
TTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026372XLOC_026372Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042553-proteinTCONS_00042553-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042553-exon-sc0003488-1575043694:6900..7701TCONS_00042553-exon-sc0003488-1575043694:6900..7701Clytia hemisphaericaexon
TCONS_00042553-exon-sc0003488-1575043694:5333..6335TCONS_00042553-exon-sc0003488-1575043694:5333..6335Clytia hemisphaericaexon
TCONS_00042553-exon-sc0003488-1510915933:6900..7701TCONS_00042553-exon-sc0003488-1510915933:6900..7701Clytia hemisphaericaexon
TCONS_00042553-exon-sc0003488-1510915933:5333..6335TCONS_00042553-exon-sc0003488-1510915933:5333..6335Clytia hemisphaericaexon
TCONS_00042553-exon-sc0003488-1491911889:6900..7701TCONS_00042553-exon-sc0003488-1491911889:6900..7701Clytia hemisphaericaexon
TCONS_00042553-exon-sc0003488-1491911889:5333..6335TCONS_00042553-exon-sc0003488-1491911889:5333..6335Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003488supercontigsc0003488:5333..7701 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.19321e-05	0.269415	0.081301	0.0272202	0.42521	0.204172	0.468863	3.54886e-07	0.265578	0.624017	0.451203	0	0.607711	1.19751	0	0.663232	0	0	0.453776	0.0810082	0.432732	0.441549	0.0659164	0.00183386	0.526525	0.159734	0	0.42488	0	0.00567715
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
IPR021109Peptidase_aspartic_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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