TCONS_00042548 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042548
Unique NameTCONS_00042548
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042548 ID=TCONS_00042548|Name=TCONS_00042548|organism=Clytia hemisphaerica|type=transcript|length=358bp
CCCAGCTGTCGATATTCACGATCTACAAAAGTTTCATTgattgtaatgtt
tttttttctcttttaaggATATACCAGCATGATAACTAAGGTTATGAACG
ATGACCAGCCCATTACAGACTTGACAGCTGACCACTTAGTGGACGGGCTT
GACTTGACGGTACCAAATTTCAGAGCATTAACTTCCTTTATACAAGCCTA
TGAAAAATTGGTACAGTTCGATACACTCGTTCTCCAATGTTATCGGCAAA
ATATGACtaatattaaattaaaaagcgTATACTTccatttctcaatttta
aattattttatcaaCGCAACTAATACACGACCAGAATTCGCTGGTAAATG
GTGGCTGA
Run BLAST on NCBI

transcript from alignment at sc0003483:9879..10236

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042548 ID=TCONS_00042548|Name=TCONS_00042548|organism=Clytia hemisphaerica|type=transcript|length=358bp|location=Sequence derived from alignment at sc0003483:9879..10236 (Clytia hemisphaerica)
TCAGCCACCATTTACCAGCGAATTCTGGTCGTGTATTAGTTGCGttgata
aaataatttaaaattgagaaatggAAGTATAcgctttttaatttaatatt
aGTCATATTTTGCCGATAACATTGGAGAACGAGTGTATCGAACTGTACCA
ATTTTTCATAGGCTTGTATAAAGGAAGTTAATGCTCTGAAATTTGGTACC
GTCAAGTCAAGCCCGTCCACTAAGTGGTCAGCTGTCAAGTCTGTAATGGG
CTGGTCATCGTTCATAACCTTAGTTATCATGCTGGTATATccttaaaaga
gaaaaaaaaacattacaatcAATGAAACTTTTGTAGATCGTGAATATCGA
CAGCTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026369XLOC_026369Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042548-exon-sc0003483-1491911889:9879..10236TCONS_00042548-exon-sc0003483-1491911889:9879..10236Clytia hemisphaericaexon
TCONS_00042548-exon-sc0003483-1510915933:9879..10236TCONS_00042548-exon-sc0003483-1510915933:9879..10236Clytia hemisphaericaexon
TCONS_00042548-exon-sc0003483-1575043694:9879..10236TCONS_00042548-exon-sc0003483-1575043694:9879..10236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003483supercontigsc0003483:9879..10236 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.321099	0	0	0	0.200647	0.745601	1.4474	0	3.00877	2.30237	0.135204	0.145095	0	0.183208	3.29045	0.794589	0	0.336871	0.546014	0	0.255643	1.59709	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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