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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042535 ID=TCONS_00042535|Name=TCONS_00042535|organism=Clytia hemisphaerica|type=transcript|length=565bpRun BLAST on NCBI transcript from alignment at sc0003480:213..3783+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00042535 ID=TCONS_00042535|Name=TCONS_00042535|organism=Clytia hemisphaerica|type=transcript|length=3571bp|location=Sequence derived from alignment at sc0003480:213..3783+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00042535 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 8.648e-25 Identity = 56/109 (51.38%), Postives = 68/109 (62.39%), Query Frame = 3
Query: 45 CTLSCGSGTQYRTRACDNPARQYGGKHCQGDEREERACNTNPCPVDXXXXXXXXXXXCTLSCGTGTQYRTRACDNPASQYGGKHCEGDGREEKSCNTNPCP--GCRSGW 365
C+++CG G Q R+R C+ P GGK CQG + E R C PCPVDG WS WS + CT SCG G Q RTR C+NP+ Q+GG+ CEG+ E CN PCP G S W
Sbjct: 4541 CSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAW 4649 HSP 2 Score: 95.5153 bits (236), Expect = 3.880e-22 Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = 3
Query: 45 CTLSCGSGTQYRTRACDNPARQYGGKHCQGDEREERACNTNPCPVDXXXXXXXXXXXCTLSCGTGTQYRTRACDNPASQYGGKHCEGDGREEKSCNTNPCP--GCRSGWT 368
C+ SCG GTQ R R C+NP +GG +C G E + + CN CP+ G W++W+ +S+C++SCG G + RTR C +P QYGG+ CEG + CN++PCP G S W+
Sbjct: 4655 CSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWS 4764 HSP 3 Score: 93.2041 bits (230), Expect = 2.479e-21 Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = 3
Query: 45 CTLSCGSGTQYRTRACDNPARQYGGKHCQGDEREERACNTNPCPVDXXXXXXXXXXXCTLSCGTGTQYRTRACDNPASQYGGKHCEGDGREEKSCNTNPCP 347
CT SCG G Q RTR C+NP+ Q+GG+ C+G+ E CN PCPV G WS+W + +C+ SCG GTQ R R C+NP +GG +C+G + + CN CP
Sbjct: 4598 CTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCP 4698 HSP 4 Score: 82.0333 bits (201), Expect = 1.259e-17 Identity = 48/114 (42.11%), Postives = 67/114 (58.77%), Query Frame = 3
Query: 45 CTLSCGSGTQYRTRACDNPARQYGGKHCQGDEREERACNTNPCPVDXXXXXXXXXXXCTLSCGTGTQYRTRACDNPASQYGGKHCEGDGREEKSCNTNPCP-----GCRSGWTQ 371
C++SCG G + RTR C +P QYGG+ C+G + + CN++PCP G WS WSG+ +C+ +C G R R CDNP GG+ C G + + CNT+ CP G W+Q
Sbjct: 4712 CSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQ 4825 HSP 5 Score: 78.1814 bits (191), Expect = 2.120e-16 Identity = 45/102 (44.12%), Postives = 58/102 (56.86%), Query Frame = 3
Query: 45 CTLSCGSGTQYRTRACDNPARQYGGKHCQGDEREERACNTNPCPVDXXXXXXXXXXXCTLSCGTGTQYRTRACDNPASQYGGKHCEGDGREEKSCNTNPCPG 350
C+ +C G R R CDNP GG+ C G + + + CNT+ CPVDG W SW +S C+ SCG G + R R CD+P GG+ C GD + CN CPG
Sbjct: 4769 CSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPG 4870 The following BLAST results are available for this feature:
BLAST of TCONS_00042535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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